Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g08070 |
| malus_domestica | MD02G1236500.v1.1 MD07G1083600.v1.1 |
| prunus_persica | Prupe.2G108200_v2.0.a1 |
| pyrus_communis | pycom02g19880 |
| rosa_chinensis | RchiOBHm_Chr1g0341251 |
| rosa_laevigata | RLG00000029075 |
| rosa_multiflora | Rmu_sc0004092.1_g000044 |
| rosa_rugosa | Rorug01G0158500.1 |
| rosa_samantha | Rh1AG172800 Rh1BG140900 Rh1CG160900 Rh1DG173100 |
| rosa_wichuraiana | Rw1G014420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 156 |
| Acc36I | ACCTGC | 1 cut(s) | 835 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 583 |
| AccBSI | CCGCTC | 1 cut(s) | 820 |
| AccI | GTMKAC | 2 cut(s) | 229, 244 |
| AclWI | GGATC | 3 cut(s) | 262, 696, 779 |
| AcoI | YGGCCR | 2 cut(s) | 870, 878 |
| AcyI | GRCGYC | 1 cut(s) | 153 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 206, 211, 212, 381, 583, 666, 794 |
| AgsI | TTSAA | 1 cut(s) | 811 |
| AjnI | CCWGG | 3 cut(s) | 205, 250, 576 |
| AluBI | AGCT | 5 cut(s) | 49, 317, 449, 694, 841 |
| AluI | AGCT | 5 cut(s) | 49, 317, 449, 694, 841 |
| Alw21I | GWGCWC | 2 cut(s) | 319, 607 |
| AlwI | GGATC | 3 cut(s) | 262, 696, 779 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 342 |
| Ama87I | CYCGRG | 2 cut(s) | 291, 533 |
| AoxI | GGCC | 5 cut(s) | 537, 574, 620, 870, 878 |
| ApeKI | GCWGC | 7 cut(s) | 46, 449, 472, 694, 703, 706, 841 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 541, 573 |
| AspLEI | GCGC | 3 cut(s) | 302, 461, 529 |
| AspS9I | GGNCC | 3 cut(s) | 537, 574, 620 |
| AsuC2I | CCSGG | 3 cut(s) | 534, 535, 874 |
| AvaI | CYCGRG | 2 cut(s) | 291, 533 |
| BanII | GRGCYC | 2 cut(s) | 23, 319 |
| BbsI | GAAGAC | 2 cut(s) | 714, 783 |
| Bbv12I | GWGCWC | 2 cut(s) | 319, 607 |
| BbvI | GCAGC | 7 cut(s) | 58, 436, 459, 681, 715, 718, 828 |
| BceAI | ACGGC | 1 cut(s) | 493 |
| BciT130I | CCWGG | 3 cut(s) | 207, 252, 578 |
| BclI | TGATCA | 2 cut(s) | 97, 282 |
| BcnI | CCSGG | 3 cut(s) | 534, 535, 874 |
| BfaI | CTAG | 1 cut(s) | 543 |
| BfmI | CTRYAG | 2 cut(s) | 695, 842 |
| BfuAI | ACCTGC | 1 cut(s) | 835 |
| BlpI | GCTNAGC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 6 cut(s) | 207, 252, 534, 535, 578, 874 |
| BmeT110I | CYCGRG | 2 cut(s) | 291, 533 |
| BmgT120I | GGNCC | 3 cut(s) | 537, 574, 620 |
| BmiI | GGNNCC | 1 cut(s) | 538 |
| BmrFI | CCNGG | 6 cut(s) | 207, 252, 534, 535, 578, 874 |
| BmsI | GCATC | 3 cut(s) | 35, 623, 690 |
| BpiI | GAAGAC | 2 cut(s) | 714, 783 |
| BpmI | CTGGAG | 3 cut(s) | 220, 234, 243 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 22 |
| BpuMI | CCSGG | 3 cut(s) | 534, 535, 874 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| BsaHI | GRCGYC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 4 cut(s) | 205, 533, 534, 675 |
| BsaWI | WCCGGW | 1 cut(s) | 82 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 206, 211, 212, 381, 583, 666, 794 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseBI | CCWGG | 3 cut(s) | 207, 252, 578 |
| BseDI | CCNNGG | 4 cut(s) | 205, 533, 534, 675 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 206, 211, 212, 381, 583, 666, 794 |
| BseMII | CTCAG | 2 cut(s) | 36, 395 |
| BseRI | GAGGAG | 2 cut(s) | 121, 777 |
| BseX3I | CGGCCG | 2 cut(s) | 870, 878 |
| BseXI | GCAGC | 7 cut(s) | 58, 436, 459, 681, 715, 718, 828 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| Bsh1285I | CGRYCG | 2 cut(s) | 873, 881 |
| BshFI | GGCC | 5 cut(s) | 539, 576, 622, 872, 880 |
| BsiEI | CGRYCG | 2 cut(s) | 873, 881 |
| BsiHKAI | GWGCWC | 2 cut(s) | 319, 607 |
| BsiHKCI | CYCGRG | 2 cut(s) | 291, 533 |
| BsiSI | CCGG | 3 cut(s) | 83, 534, 873 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 206, 211, 212, 381, 583, 666, 794 |
| BsnI | GGCC | 5 cut(s) | 539, 576, 622, 872, 880 |
| BsoBI | CYCGRG | 2 cut(s) | 291, 533 |
| Bsp1286I | GDGCHC | 3 cut(s) | 23, 319, 607 |
| Bsp143I | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 22 |
| BspANI | GGCC | 5 cut(s) | 539, 576, 622, 872, 880 |
| BspCNI | CTCAG | 2 cut(s) | 35, 396 |
| BspLI | GGNNCC | 1 cut(s) | 538 |
| BspMAI | CTGCAG | 2 cut(s) | 699, 846 |
| BspMI | ACCTGC | 1 cut(s) | 835 |
| BspPI | GGATC | 3 cut(s) | 262, 696, 779 |
| BsrBI | CCGCTC | 1 cut(s) | 820 |
| BssECI | CCNNGG | 4 cut(s) | 205, 533, 534, 675 |
| BssMI | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| BssNI | GRCGYC | 1 cut(s) | 153 |
| BssT1I | CCWWGG | 1 cut(s) | 675 |
| Bst2UI | CCWGG | 3 cut(s) | 207, 252, 578 |
| Bst6I | CTCTTC | 1 cut(s) | 678 |
| BstACI | GRCGYC | 1 cut(s) | 153 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 712 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 315, 437, 457 |
| BstDEI | CTNAG | 3 cut(s) | 10, 22, 404 |
| BstEII | GGTNACC | 1 cut(s) | 421 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 664 |
| BstHHI | GCGC | 3 cut(s) | 302, 461, 529 |
| BstKTI | GATC | 6 cut(s) | 100, 190, 257, 285, 691, 787 |
| BstMBI | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| BstMCI | CGRYCG | 2 cut(s) | 873, 881 |
| BstNI | CCWGG | 3 cut(s) | 207, 252, 578 |
| BstNSI | RCATGY | 1 cut(s) | 832 |
| BstPI | GGTNACC | 1 cut(s) | 421 |
| BstSCI | CCNGG | 6 cut(s) | 205, 250, 532, 533, 576, 872 |
| BstSFI | CTRYAG | 2 cut(s) | 695, 842 |
| BstV1I | GCAGC | 7 cut(s) | 58, 436, 459, 681, 715, 718, 828 |
| BstV2I | GAAGAC | 2 cut(s) | 714, 783 |
| BstX2I | RGATCY | 1 cut(s) | 784 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 559 |
| BstYI | RGATCY | 1 cut(s) | 784 |
| BstZI | CGGCCG | 2 cut(s) | 870, 878 |
| BsuRI | GGCC | 5 cut(s) | 539, 576, 622, 872, 880 |
| BtsI | GCAGTG | 2 cut(s) | 343, 745 |
| BtsIMutI | CAGTG | 2 cut(s) | 343, 745 |
| BveI | ACCTGC | 1 cut(s) | 835 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 315, 437, 457 |
| CaiI | CAGNNNCTG | 1 cut(s) | 342 |
| CciNI | GCGGCCGC | 1 cut(s) | 878 |
| CfoI | GCGC | 3 cut(s) | 302, 461, 529 |
| Cfr13I | GGNCC | 3 cut(s) | 537, 574, 620 |
| Cfr9I | CCCGGG | 1 cut(s) | 533 |
| CseI | GACGC | 2 cut(s) | 240, 428 |
| CviAII | CATG | 1 cut(s) | 829 |
| DdeI | CTNAG | 3 cut(s) | 10, 22, 404 |
| DpnI | GATC | 6 cut(s) | 99, 189, 256, 284, 690, 786 |
| DpnII | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| EaeI | YGGCCR | 2 cut(s) | 870, 878 |
| EagI | CGGCCG | 2 cut(s) | 870, 878 |
| Eam1104I | CTCTTC | 1 cut(s) | 678 |
| EarI | CTCTTC | 1 cut(s) | 678 |
| EciI | GGCGGA | 1 cut(s) | 747 |
| Ecl136II | GAGCTC | 1 cut(s) | 317 |
| EclXI | CGGCCG | 2 cut(s) | 870, 878 |
| Eco130I | CCWWGG | 1 cut(s) | 675 |
| Eco24I | GRGCYC | 2 cut(s) | 23, 319 |
| Eco52I | CGGCCG | 2 cut(s) | 870, 878 |
| Eco53kI | GAGCTC | 1 cut(s) | 317 |
| Eco88I | CYCGRG | 2 cut(s) | 291, 533 |
| Eco91I | GGTNACC | 1 cut(s) | 421 |
| EcoICRI | GAGCTC | 1 cut(s) | 317 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 664 |
| EcoO65I | GGTNACC | 1 cut(s) | 421 |
| EcoRII | CCWGG | 3 cut(s) | 205, 250, 576 |
| EcoT14I | CCWWGG | 1 cut(s) | 675 |
| EcoT38I | GRGCYC | 2 cut(s) | 23, 319 |
| ErhI | CCWWGG | 1 cut(s) | 675 |
| FaeI | CATG | 1 cut(s) | 832 |
| FatI | CATG | 1 cut(s) | 828 |
| FauNDI | CATATG | 1 cut(s) | 370 |
| FbaI | TGATCA | 2 cut(s) | 97, 282 |
| FblI | GTMKAC | 2 cut(s) | 229, 244 |
| FriOI | GRGCYC | 2 cut(s) | 23, 319 |
| FspBI | CTAG | 1 cut(s) | 543 |
| GlaI | GCGC | 3 cut(s) | 301, 460, 528 |
| GsuI | CTGGAG | 3 cut(s) | 220, 234, 243 |
| HaeIII | GGCC | 5 cut(s) | 539, 576, 622, 872, 880 |
| HapII | CCGG | 3 cut(s) | 83, 534, 873 |
| HgaI | GACGC | 2 cut(s) | 240, 428 |
| HhaI | GCGC | 3 cut(s) | 302, 461, 529 |
| Hin1I | GRCGYC | 1 cut(s) | 153 |
| Hin1II | CATG | 1 cut(s) | 832 |
| Hin6I | GCGC | 3 cut(s) | 300, 459, 527 |
| HinP1I | GCGC | 3 cut(s) | 300, 459, 527 |
| HincII | GTYRAC | 4 cut(s) | 230, 245, 443, 501 |
| HindII | GTYRAC | 4 cut(s) | 230, 245, 443, 501 |
| HinfI | GANTC | 4 cut(s) | 86, 218, 356, 490 |
| HpaII | CCGG | 3 cut(s) | 83, 534, 873 |
| Hpy166II | GTNNAC | 5 cut(s) | 230, 245, 443, 501, 648 |
| Hpy188I | TCNGA | 2 cut(s) | 91, 136 |
| Hpy188III | TCNNGA | 4 cut(s) | 222, 237, 293, 782 |
| Hpy8I | GTNNAC | 5 cut(s) | 230, 245, 443, 501, 648 |
| Hpy99I | CGWCG | 3 cut(s) | 155, 158, 234 |
| HpyAV | CCTTC | 1 cut(s) | 814 |
| HpyCH4IV | ACGT | 3 cut(s) | 153, 429, 654 |
| HpyCH4V | TGCA | 4 cut(s) | 475, 697, 703, 844 |
| HpyF3I | CTNAG | 3 cut(s) | 10, 22, 404 |
| HpySE526I | ACGT | 3 cut(s) | 153, 429, 654 |
| Hsp92I | GRCGYC | 1 cut(s) | 153 |
| Hsp92II | CATG | 1 cut(s) | 832 |
| HspAI | GCGC | 3 cut(s) | 300, 459, 527 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 282 |
| Kzo9I | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| LmnI | GCTCC | 3 cut(s) | 54, 239, 602 |
| Lsp1109I | GCAGC | 7 cut(s) | 58, 436, 459, 681, 715, 718, 828 |
| LweI | GCATC | 3 cut(s) | 35, 623, 690 |
| MaeI | CTAG | 1 cut(s) | 543 |
| MaeII | ACGT | 3 cut(s) | 153, 429, 654 |
| MaeIII | GTNAC | 4 cut(s) | 193, 421, 466, 766 |
| MalI | GATC | 6 cut(s) | 99, 189, 256, 284, 690, 786 |
| MbiI | CCGCTC | 1 cut(s) | 820 |
| MboI | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| MboII | GAAGA | 5 cut(s) | 695, 714, 783, 799, 806 |
| MflI | RGATCY | 1 cut(s) | 784 |
| MhlI | GDGCHC | 3 cut(s) | 23, 319, 607 |
| MmeI | TCCRAC | 2 cut(s) | 159, 343 |
| MspA1I | CMGCKG | 3 cut(s) | 449, 694, 841 |
| MspI | CCGG | 3 cut(s) | 83, 534, 873 |
| MspR9I | CCNGG | 6 cut(s) | 207, 252, 534, 535, 578, 874 |
| MvaI | CCWGG | 3 cut(s) | 207, 252, 578 |
| NciI | CCSGG | 3 cut(s) | 534, 535, 874 |
| NdeI | CATATG | 1 cut(s) | 370 |
| NdeII | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| NlaIII | CATG | 1 cut(s) | 832 |
| NlaIV | GGNNCC | 1 cut(s) | 538 |
| NmeAIII | GCCGAG | 1 cut(s) | 848 |
| NmuCI | GTSAC | 2 cut(s) | 193, 466 |
| NotI | GCGGCCGC | 1 cut(s) | 878 |
| NspI | RCATGY | 1 cut(s) | 832 |
| PfeI | GAWTC | 4 cut(s) | 86, 218, 356, 490 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 583 |
| PfoI | TCCNGGA | 1 cut(s) | 250 |
| Psp124BI | GAGCTC | 1 cut(s) | 319 |
| Psp6I | CCWGG | 3 cut(s) | 205, 250, 576 |
| PspEI | GGTNACC | 1 cut(s) | 421 |
| PspGI | CCWGG | 3 cut(s) | 205, 250, 576 |
| PspN4I | GGNNCC | 1 cut(s) | 538 |
| PspPI | GGNCC | 3 cut(s) | 537, 574, 620 |
| PstI | CTGCAG | 2 cut(s) | 699, 846 |
| PstNI | CAGNNNCTG | 1 cut(s) | 342 |
| PsuI | RGATCY | 1 cut(s) | 784 |
| PvuII | CAGCTG | 3 cut(s) | 449, 694, 841 |
| SacI | GAGCTC | 1 cut(s) | 319 |
| SalI | GTCGAC | 2 cut(s) | 228, 243 |
| Sau3AI | GATC | 6 cut(s) | 97, 187, 254, 282, 688, 784 |
| Sau96I | GGNCC | 3 cut(s) | 537, 574, 620 |
| ScrFI | CCNGG | 6 cut(s) | 207, 252, 534, 535, 578, 874 |
| SduI | GDGCHC | 3 cut(s) | 23, 319, 607 |
| SfaNI | GCATC | 3 cut(s) | 35, 623, 690 |
| SfcI | CTRYAG | 2 cut(s) | 695, 842 |
| SmaI | CCCGGG | 1 cut(s) | 535 |
| SspMI | CTAG | 1 cut(s) | 543 |
| SstI | GAGCTC | 1 cut(s) | 319 |
| StyD4I | CCNGG | 6 cut(s) | 205, 250, 532, 533, 576, 872 |
| StyI | CCWWGG | 1 cut(s) | 675 |
| TaiI | ACGT | 3 cut(s) | 156, 432, 657 |
| TaqI | TCGA | 3 cut(s) | 156, 229, 244 |
| TauI | GCSGC | 8 cut(s) | 455, 718, 732, 750, 753, 756, 880, 883 |
| TfiI | GAWTC | 4 cut(s) | 86, 218, 356, 490 |
| TscAI | CASTG | 2 cut(s) | 343, 745 |
| TseFI | GTSAC | 2 cut(s) | 193, 466 |
| TseI | GCWGC | 7 cut(s) | 46, 449, 472, 694, 703, 706, 841 |
| Tsp45I | GTSAC | 2 cut(s) | 193, 466 |
| TspDTI | ATGAA | 1 cut(s) | 29 |
| TspGWI | ACGGA | 2 cut(s) | 349, 777 |
| TspMI | CCCGGG | 1 cut(s) | 533 |
| TspRI | CASTG | 2 cut(s) | 343, 745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 583 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 664 |
| XceI | RCATGY | 1 cut(s) | 832 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 584 |
| XmaI | CCCGGG | 1 cut(s) | 533 |
| XmiI | GTMKAC | 2 cut(s) | 229, 244 |
| XspI | CTAG | 1 cut(s) | 543 |
| ZraI | GACGTC | 1 cut(s) | 154 |