FvH4_7g18841

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018873
Physical Location & Seq
Reverse (-)
15639438 .. 15641092
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18841.t1

Sequence Viewer

Length: 402 bp
ATGTCAAAGGTCGTGAGATTCCAGAGCTCGAACAAAGAAGTATTAGAAGCAGCCGAGTGCATGGTAACTATGTCCAAAACCATTCAGACAATGCTGAATAGGTTCCAAGAAGACCAGGTGATCATGCTTCCACTAGAGCAGGTGGATTCCAAAACCCTAACCATGGTAAGAGAATGGTGTGAGAATCACGTCACGAAGAGTACCCAAAAACAGTACCAATTTGTGGAGGGGCTCGATGTTGACGTTCTCTTGCTTCTCCTCAAAACTGCAAACTATCTCAACATCAAGGAGTTGGGAGATGATATGCGCGAAGCGATCGCGGAGAGGGCTCGTAGGAAAGCACTTGAAGAGATCGATCCGAGAATTCTCCATACTCGGGCTTCTGCACAGCTCACATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

134

Amino Acids

15.39

Weight (kDa)

5.74

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 3 - 64 6.4e-10 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018873)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18841
rosa_laevigata RLG00000027630
rosa_multiflora Rmu_sc0000046.1_g000029
rosa_roxburghii Rroxscaffold_4G00293870
rosa_rugosa Rorug01G0300400
rosa_samantha Rh1AG309000 Rh1BG272800 Rh1DG303300
rosa_wichuraiana Rw1G027470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 223
AccII CGCG 2 cut(s) 309, 320
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 363
AfaI GTAC 2 cut(s) 202, 215
AfiI CCNNNNNNNGG 3 cut(s) 163, 223, 376
AgsI TTSAA 1 cut(s) 347
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 27, 391
AluI AGCT 2 cut(s) 27, 391
Alw21I GWGCWC 1 cut(s) 29
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 363
AsiSI GCGATCGC 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 375
BanII GRGCYC 3 cut(s) 29, 234, 331
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 120
BfaI CTAG 2 cut(s) 134, 400
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 223, 376
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 3 cut(s) 163, 223, 376
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 309, 320
Bsh1285I CGRYCG 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 375
BslI CCNNNNNNNGG 3 cut(s) 163, 223, 376
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 3 cut(s) 29, 234, 331
Bsp143I GATC 4 cut(s) 120, 315, 351, 355
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 1 cut(s) 320
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 2 cut(s) 309, 320
BspLI GGNNCC 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 120, 315, 351, 355
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 191, 342
BstDSI CCRYGG 1 cut(s) 162
BstFNI CGCG 2 cut(s) 309, 320
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 4 cut(s) 123, 318, 354, 358
BstMBI GATC 4 cut(s) 120, 315, 351, 355
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 2 cut(s) 309, 320
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 190
BveI ACCTGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 201, 214
CviAII CATG 4 cut(s) 61, 124, 163, 396
CviJI RGCY 6 cut(s) 27, 53, 232, 329, 380, 391
CviKI_1 RGCY 6 cut(s) 27, 53, 232, 329, 380, 391
CviQI GTAC 2 cut(s) 201, 214
DpnI GATC 4 cut(s) 122, 317, 353, 357
DpnII GATC 4 cut(s) 120, 315, 351, 355
Eam1104I CTCTTC 2 cut(s) 191, 342
EarI CTCTTC 2 cut(s) 191, 342
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 3 cut(s) 29, 234, 331
Eco53kI GAGCTC 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 3 cut(s) 29, 234, 331
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 64, 127, 166, 399
FaiI YATR 7 cut(s) 62, 71, 125, 164, 305, 372, 397
FatI CATG 4 cut(s) 60, 123, 162, 395
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 51
FriOI GRGCYC 3 cut(s) 29, 234, 331
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 134, 400
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 309
Hin1II CATG 4 cut(s) 64, 127, 166, 399
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 3 cut(s) 18, 146, 184
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 87, 360
Hpy188III TCNNGA 3 cut(s) 13, 22, 193
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 2 cut(s) 189, 243
HpyCH4V TGCA 3 cut(s) 60, 269, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 189, 243
Hsp92II CATG 4 cut(s) 64, 127, 166, 399
HspAI GCGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 4 cut(s) 120, 315, 351, 355
LpnPI CCDG 4 cut(s) 35, 101, 125, 128
Lsp1109I GCAGC 1 cut(s) 62
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 2 cut(s) 134, 400
MaeII ACGT 2 cut(s) 189, 243
MaeIII GTNAC 2 cut(s) 64, 190
MalI GATC 4 cut(s) 122, 317, 353, 357
MboI GATC 4 cut(s) 120, 315, 351, 355
MboII GAAGA 3 cut(s) 122, 208, 359
MhlI GDGCHC 3 cut(s) 29, 234, 331
MluCI AATT 2 cut(s) 218, 363
MnlI CCTC 3 cut(s) 220, 269, 318
MroXI GAANNNNTTC 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 2 cut(s) 309, 320
MwoI GCNNNNNNNGC 1 cut(s) 326
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 120, 315, 351, 355
NlaIII CATG 4 cut(s) 64, 127, 166, 399
NlaIV GGNNCC 1 cut(s) 104
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 399
PaqCI CACCTGC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 3 cut(s) 18, 146, 184
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 52
Ple19I CGATCG 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 104
PvuI CGATCG 1 cut(s) 318
RgaI GCGATCGC 1 cut(s) 318
RsaI GTAC 2 cut(s) 202, 215
RsaNI GTAC 2 cut(s) 201, 214
SacI GAGCTC 1 cut(s) 29
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 4 cut(s) 120, 315, 351, 355
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 29, 234, 331
SetI ASST 8 cut(s) 12, 29, 104, 120, 144, 192, 246, 393
SexAI ACCWGGT 1 cut(s) 114
SfaAI GCGATCGC 1 cut(s) 318
SgfI GCGATCGC 1 cut(s) 318
Sse9I AATT 2 cut(s) 218, 363
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 134, 400
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 2 cut(s) 192, 246
TaqI TCGA 3 cut(s) 29, 234, 354
TasI AATT 2 cut(s) 218, 363
TfiI GAWTC 3 cut(s) 18, 146, 184
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 363
XceI RCATGY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 134, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.