Rw1G027470

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0018873
Physical Location & Seq
Reverse (-)
54935693 .. 54936088
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027470.1

Sequence Viewer

Length: 396 bp
ATGTCACATGTTGTGAGATTGCGGAGCTCGAACAACGAAGTGTTCGAAGCAGCCGGGTGCATGATAGCCATGTCCAAAACCATTCAGACAATGCTAAATAGGTTCCAAGACGACCAAGTGGTGATACTTCCACTGGAACAAGTGGATTCCAAAACCCTAGCCATGGTAAGAGAGTGGTGTGACAATCACGTCACGAAGAGCACCCTAAAACAGTACCAATTTGTGGAGGGACTCGACATAGACGTTCTCTTGCATCTCCTGATAACTGCAAACTATCTGGGCATCAAGGAGTTGGGGAATCATATGCGCGAAGCGATTGCGGAGAGGGCTCAAAGGAAAGCACTTGAAGAGATCGATCCCAGAAGTTTTCATACTGCAGTTTTTTTAAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

131

Amino Acids

14.97

Weight (kDa)

6.19

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 4 - 64 2.5e-10 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018873)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18841
rosa_laevigata RLG00000027630
rosa_multiflora Rmu_sc0000046.1_g000029
rosa_roxburghii Rroxscaffold_4G00293870
rosa_rugosa Rorug01G0300400
rosa_samantha Rh1AG309000 Rh1BG272800 Rh1DG303300
rosa_wichuraiana Rw1G027470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 223
AccII CGCG 1 cut(s) 309
AciI CCGC 2 cut(s) 22, 320
AclWI GGATC 1 cut(s) 350
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 163, 223
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 1 cut(s) 347
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw21I GWGCWC 2 cut(s) 29, 203
AlwI GGATC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 45
BanII GRGCYC 2 cut(s) 29, 331
BarI GAAGNNNNNNTAC 2 cut(s) 355, 387
Bbv12I GWGCWC 2 cut(s) 29, 203
BbvI GCAGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 2 cut(s) 262, 291
Bpu14I TTCGAA 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 223
Bse1I ACTGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 163, 223
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 2 cut(s) 29, 203
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 163, 223
BsmFI GGGAC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 3 cut(s) 29, 203, 331
Bsp143I GATC 2 cut(s) 351, 355
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 2 cut(s) 22, 320
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 104
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 1 cut(s) 350
BspQI GCTCTTC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 351, 355
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 191, 342
BstBI TTCGAA 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 2 cut(s) 354, 358
BstMBI GATC 2 cut(s) 351, 355
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 375
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 131
CfoI GCGC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 1 cut(s) 214
CviAII CATG 4 cut(s) 8, 61, 70, 163
CviJI RGCY 5 cut(s) 27, 53, 68, 161, 329
CviKI_1 RGCY 5 cut(s) 27, 53, 68, 161, 329
CviQI GTAC 1 cut(s) 214
DpnI GATC 2 cut(s) 353, 357
DpnII GATC 2 cut(s) 351, 355
DraI TTTAAA 1 cut(s) 387
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 191, 342
EarI CTCTTC 2 cut(s) 191, 342
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 29, 331
Eco53kI GAGCTC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 29, 331
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 11, 64, 73, 166
FaiI YATR 8 cut(s) 9, 62, 71, 164, 239, 303, 305, 372
FaqI GGGAC 1 cut(s) 243
FatI CATG 4 cut(s) 7, 60, 69, 162
FauNDI CATATG 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 51
FriOI GRGCYC 2 cut(s) 29, 331
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 51
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 309
Hin1II CATG 4 cut(s) 11, 64, 73, 166
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 3 cut(s) 146, 231, 298
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 193, 259
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 2 cut(s) 189, 243
HpyCH4V TGCA 4 cut(s) 60, 253, 269, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 189, 243
Hsp92II CATG 4 cut(s) 11, 64, 73, 166
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 351, 355
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 67, 119, 263, 272, 373
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 262, 291
MaeI CTAG 1 cut(s) 158
MaeII ACGT 2 cut(s) 189, 243
MaeIII GTNAC 3 cut(s) 3, 179, 190
MalI GATC 2 cut(s) 353, 357
MboI GATC 2 cut(s) 351, 355
MboII GAAGA 2 cut(s) 208, 359
MhlI GDGCHC 3 cut(s) 29, 203, 331
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 2 cut(s) 220, 318
MseI TTAA 1 cut(s) 386
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 303
NdeII GATC 2 cut(s) 351, 355
NlaIII CATG 4 cut(s) 11, 64, 73, 166
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 3 cut(s) 3, 179, 190
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 1 cut(s) 45
PciI ACATGT 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 240
PfeI GAWTC 2 cut(s) 146, 298
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PscI ACATGT 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 104
PstI CTGCAG 1 cut(s) 379
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 351, 355
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 29, 203, 331
SetI ASST 4 cut(s) 29, 104, 192, 246
SfaNI GCATC 2 cut(s) 262, 291
SfcI CTRYAG 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 45
Sse9I AATT 1 cut(s) 218
SsiI CCGC 2 cut(s) 22, 320
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 2 cut(s) 192, 246
TaqI TCGA 4 cut(s) 29, 45, 234, 354
TasI AATT 1 cut(s) 218
TfiI GAWTC 2 cut(s) 146, 298
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 3 cut(s) 3, 179, 190
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 3 cut(s) 3, 179, 190
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 223
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.