Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013854

Physical Location & Seq

Genomic Coordinates Forward (+)

4455540 .. 4458016

Gene Structure 2477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1025700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCGGGGAAGGGCGCGAAGGGGCTGATTATGGGCAAGACCGCCACCAACAGCGGCGGCAAAGATAAGGACAAGAAGAAACCCATCTCTCGTTCATCCCGCGCCGGCCTTCAGTTCCCTGTGGGTCGAATCCACCGGCTTCTGAAGTTAAGGACCACAGCTAATGGGAGAGTGGGAGCAACGGCCGCAGTTTATTCTGCAGCGATCTTGGAGTATCTCACTGCTGAGGTGTTAGAGTTGGCAGGCAATGCGAGCAAGGATCTCAAGGTGAAACGTATCACTCCGAGGCATTTGCAGCTTGCTATTCGTGGTGACGAGGAACTCGACACCCTCATCAAAGGAACCATTGCTGGTGGAGGTGTGATCCCTCACATCCACAAGTCACTTATCAACAAGTCGACCAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

137

Amino Acids

14.45

Weight (kDa)

10.39

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	22 - 104	1.9e-18	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	106 - 135	7.2e-11	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52740
fragaria_vesca	FvH4_1g04010
malus_domestica	MD00G1025700.v1.1 MD15G1178500.v1.1
prunus_persica	Prupe.7G236800_v2.0.a1
pyrus_communis	pycom02g03150
rosa_chinensis	RchiOBHm_Chr2g0089481
rosa_laevigata	RLG00000016034
rosa_multiflora	Rmu_sc0000197.1_g000004 Rmu_sc0025925.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151890
rosa_rugosa	Rorug02G0001200
rosa_samantha	Rh2AG046400 Rh2BG045000 Rh2CG046800 Rh2DG046400
rosa_wichuraiana	Rw2G003620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AccII	CGCG	2 cut(s)	17, 102
AciI	CCGC	5 cut(s)	42, 54, 57, 100, 186
AclWI	GGATC	2 cut(s)	267, 358
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	95, 164
AluBI	AGCT	2 cut(s)	161, 298
AluI	AGCT	2 cut(s)	161, 298
AlwI	GGATC	2 cut(s)	267, 358
AoxI	GGCC	2 cut(s)	106, 183
ApeKI	GCWGC	2 cut(s)	200, 295
AspLEI	GCGC	2 cut(s)	17, 104
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	280, 323
AvaII	GGWCC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	212, 307
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	5 cut(s)	55, 58, 186, 201, 296
BlsI	GCNGC	5 cut(s)	56, 59, 187, 202, 297
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	284, 402
Bse118I	RCCGGY	2 cut(s)	104, 135
Bse3DI	GCAATG	2 cut(s)	253, 345
BseDI	CCNNGG	2 cut(s)	284, 402
BseGI	GGATG	2 cut(s)	95, 372
BseMI	GCAATG	2 cut(s)	253, 345
BseMII	CTCAG	1 cut(s)	216
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	212, 307
Bsh1236I	CGCG	2 cut(s)	17, 102
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	108, 185
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	105, 136
BsnI	GGCC	2 cut(s)	108, 185
Bsp143I	GATC	3 cut(s)	204, 259, 363
BspACI	CCGC	5 cut(s)	42, 54, 57, 100, 186
BspANI	GGCC	2 cut(s)	108, 185
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	17, 102
BspLI	GGNNCC	1 cut(s)	343
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	2 cut(s)	267, 358
BsrDI	GCAATG	2 cut(s)	253, 345
BsrFI	RCCGGY	2 cut(s)	104, 135
BssAI	RCCGGY	2 cut(s)	104, 135
BssECI	CCNNGG	2 cut(s)	284, 402
BssMI	GATC	3 cut(s)	204, 259, 363
BssT1I	CCWWGG	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	4 cut(s)	106, 244, 253, 300
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	95, 372
BstFNI	CGCG	2 cut(s)	17, 102
BstHHI	GCGC	2 cut(s)	17, 104
BstKTI	GATC	3 cut(s)	207, 262, 366
BstMBI	GATC	3 cut(s)	204, 259, 363
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 248, 252, 295
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	17, 102
BstV1I	GCAGC	2 cut(s)	212, 307
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	108, 185
BtsCI	GGATG	2 cut(s)	95, 372
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	106, 244, 253, 300
CfoI	GCGC	2 cut(s)	17, 104
Cfr10I	RCCGGY	2 cut(s)	104, 135
Cfr13I	GGNCC	1 cut(s)	153
CviJI	RGCY	6 cut(s)	25, 108, 139, 161, 185, 298
CviKI_1	RGCY	6 cut(s)	25, 108, 139, 161, 185, 298
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	206, 261, 365
DpnII	GATC	3 cut(s)	204, 259, 363
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	95, 164
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaiI	YATR	1 cut(s)	32
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	55, 58, 186, 201, 296
FokI	GGATG	2 cut(s)	82, 359
Fsp4HI	GCNGC	5 cut(s)	55, 58, 186, 201, 296
GlaI	GCGC	2 cut(s)	16, 103
GluI	GCNGC	5 cut(s)	55, 58, 186, 201, 296
HaeIII	GGCC	2 cut(s)	108, 185
HapII	CCGG	2 cut(s)	105, 136
HhaI	GCGC	2 cut(s)	17, 104
Hin6I	GCGC	2 cut(s)	15, 102
HinP1I	GCGC	2 cut(s)	15, 102
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	105, 136
HphI	GGTGA	2 cut(s)	280, 323
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	144, 285
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	3 cut(s)	4, 13, 119
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	200, 295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 248, 252, 295
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	274
HspAI	GCGC	2 cut(s)	15, 102
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	204, 259, 363
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	5 cut(s)	118, 132, 149, 228, 336
Lsp1109I	GCAGC	2 cut(s)	212, 307
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	311, 381
MalI	GATC	3 cut(s)	206, 261, 365
MboI	GATC	3 cut(s)	204, 259, 363
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	259
MnlI	CCTC	6 cut(s)	220, 279, 310, 341, 350, 378
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	2 cut(s)	105, 136
MvnI	CGCG	2 cut(s)	17, 102
MwoI	GCNNNNNNNGC	4 cut(s)	185, 248, 252, 295
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	3 cut(s)	204, 259, 363
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	311, 381
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	5 cut(s)	56, 59, 187, 202, 297
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	259
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	5 cut(s)	55, 58, 186, 201, 296
Sau3AI	GATC	3 cut(s)	204, 259, 363
Sau96I	GGNCC	1 cut(s)	153
SetI	ASST	6 cut(s)	163, 231, 270, 277, 300, 361
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	5 cut(s)	42, 54, 57, 100, 186
StyI	CCWWGG	1 cut(s)	402
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	127, 324, 398
TauI	GCSGC	3 cut(s)	57, 60, 188
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	311, 381
TseI	GCWGC	2 cut(s)	200, 295
Tsp45I	GTSAC	2 cut(s)	311, 381
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.