MD15G1178500.v1.1

histone h2a

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013854
Physical Location & Seq
Forward (+)
14056885 .. 14057959
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1178500.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGAGTTCCCTGTGGGTTGGATCCACCGTCTCCTGAAGTTAAGGACCACAGCTAATGGGAGAGTGGGAGCAACTGCCGCAGTTTATTCTGCAGCTATCTTGGAGTATCTTACTGCTGAGGTGTTAGAGTTGGCAGGCAATGCGAGCAAGGATCTCAAGGTGAAACGCATCACCCCGAGGCATTTGCAGCTTGCTATTCGTGGTGACGAGGAACTCGACACTCTGATCAAAGGAACCATTGCCGGTGGAGGTGTCATCCCTCACATTCACAATTCACTTGTCAACAAGTCGACCAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

101

Amino Acids

10.84

Weight (kDa)

9.45

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 3 - 68 1.6e-13 Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C PF16211 70 - 99 1.6e-10 C-terminus of histone H2A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013854)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52740
fragaria_vesca FvH4_1g04010
malus_domestica MD00G1025700.v1.1 MD15G1178500.v1.1
prunus_persica Prupe.7G236800_v2.0.a1
pyrus_communis pycom02g03150
rosa_chinensis RchiOBHm_Chr2g0089481
rosa_laevigata RLG00000016034
rosa_multiflora Rmu_sc0000197.1_g000004 Rmu_sc0025925.1_g000002
rosa_roxburghii Rroxscaffold_2G00151890
rosa_rugosa Rorug02G0001200
rosa_samantha Rh2AG046400 Rh2BG045000 Rh2CG046800 Rh2DG046400
rosa_wichuraiana Rw2G003620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 290
AciI CCGC 1 cut(s) 78
AclWI GGATC 3 cut(s) 16, 29, 159
AcuI CTGAAG 1 cut(s) 56
AluBI AGCT 3 cut(s) 53, 95, 190
AluI AGCT 3 cut(s) 53, 95, 190
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 3 cut(s) 16, 29, 159
Ama87I CYCGRG 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 92, 187
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 3 cut(s) 163, 172, 215
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 45
BamHI GGATCC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 104, 199
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 3 cut(s) 78, 93, 188
BlsI GCNGC 3 cut(s) 79, 94, 189
Bme18I GGWCC 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 23, 235
BmsI GCATC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 176, 294
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 2 cut(s) 145, 237
BseDI CCNNGG 2 cut(s) 176, 294
BseGI GGATG 1 cut(s) 255
BseMI GCAATG 2 cut(s) 145, 237
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 104, 199
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 3 cut(s) 21, 151, 225
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 23, 235
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 3 cut(s) 16, 29, 159
BsrDI GCAATG 2 cut(s) 145, 237
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 176, 294
BssMI GATC 3 cut(s) 21, 151, 225
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 136, 145, 192
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 3 cut(s) 24, 154, 228
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 3 cut(s) 21, 151, 225
BstMWI GCNNNNNNNGC 4 cut(s) 77, 140, 144, 187
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 104, 199
BstX2I RGATCY 2 cut(s) 21, 151
BstYI RGATCY 2 cut(s) 21, 151
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 136, 145, 192
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 45
CviJI RGCY 3 cut(s) 53, 95, 190
CviKI_1 RGCY 3 cut(s) 53, 95, 190
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 23, 153, 227
DpnII GATC 3 cut(s) 21, 151, 225
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 78, 93, 188
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 78, 93, 188
GluI GCNGC 3 cut(s) 78, 93, 188
HapII CCGG 1 cut(s) 243
HincII GTYRAC 2 cut(s) 283, 291
HindII GTYRAC 2 cut(s) 283, 291
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 163, 172, 215
Hpy166II GTNNAC 2 cut(s) 283, 291
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 283, 291
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 92, 187
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 140, 144, 187
HpyF3I CTNAG 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 3 cut(s) 21, 151, 225
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 24, 47, 120, 256
Lsp1109I GCAGC 2 cut(s) 104, 199
LweI GCATC 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 23, 153, 227
MboI GATC 3 cut(s) 21, 151, 225
MflI RGATCY 2 cut(s) 21, 151
MluCI AATT 1 cut(s) 271
MnlI CCTC 5 cut(s) 112, 171, 202, 242, 270
MseI TTAA 1 cut(s) 41
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 77, 140, 144, 187
NdeII GATC 3 cut(s) 21, 151, 225
NlaIV GGNNCC 2 cut(s) 23, 235
NmuCI GTSAC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PkrI GCNGC 3 cut(s) 79, 94, 189
PspN4I GGNNCC 2 cut(s) 23, 235
PspPI GGNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 2 cut(s) 21, 151
SalI GTCGAC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 3 cut(s) 78, 93, 188
Sau3AI GATC 3 cut(s) 21, 151, 225
Sau96I GGNCC 1 cut(s) 45
SetI ASST 6 cut(s) 55, 97, 123, 162, 192, 253
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 78
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 2 cut(s) 216, 290
TasI AATT 1 cut(s) 271
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 92, 187
Tsp45I GTSAC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.