Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0028732

Physical Location & Seq

Genomic Coordinates Forward (+)

4563262 .. 4568358

Gene Structure 5097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1027600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTTGATGGCGCAAGAGCTGACGAAGAGACAATTGAAAGATTAATCGAGACAGGAGACAGTGAATTCCAGAAGGCAATCCAAGAACAAGGGCGAGGCCAGATAATAGACACTCTAGCCGAAATTCAAGAGCGACATGATGCTGTTAGAGATCTTGAGAGAAAGCTTCTCGATTTACAACAGATATTTCTGGATGTGGCGGTGCTGATTGATGCACAAGGGGACTTGCTTAACAACATAGAAACCCAGGTATTTGAAAAATTTCAACTCTGCAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

4.31

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028732)

Species	Orthologous Gene IDs
malus_domestica	MD00G1027600.v1.1
pyrus_communis	pycom04g03610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	65, 123, 260
AgsI	TTSAA	4 cut(s)	38, 128, 257, 266
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	20, 166
AluI	AGCT	2 cut(s)	20, 166
Alw26I	GTCTC	3 cut(s)	23, 44, 51
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	3 cut(s)	65, 123, 260
AseI	ATTAAT	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	14
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	23, 44, 51
BfaI	CTAG	1 cut(s)	116
BglII	AGATCT	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	130, 202
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	3 cut(s)	23, 44, 51
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	3 cut(s)	23, 44, 51
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	20, 99, 119, 166
CviKI_1	RGCY	4 cut(s)	20, 99, 119, 166
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	140
FaiI	YATR	2 cut(s)	138, 239
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	136
FokI	GGATG	1 cut(s)	206
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	164
Hpy188III	TCNNGA	6 cut(s)	49, 70, 128, 155, 170, 191
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	215, 273
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	39, 83, 113, 176, 233, 260
LweI	GCATC	2 cut(s)	130, 202
MaeI	CTAG	1 cut(s)	116
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	38
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	4 cut(s)	33, 65, 123, 260
MnlI	CCTC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	44, 231
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	44, 231
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	3 cut(s)	22, 168, 252
SfaNI	GCATC	2 cut(s)	130, 202
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	33, 65, 123, 260
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	48, 171
TasI	AATT	4 cut(s)	33, 65, 123, 260
Tru1I	TTAA	2 cut(s)	44, 231
Tru9I	TTAA	2 cut(s)	44, 231
TscAI	CASTG	1 cut(s)	67
TspRI	CASTG	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	3 cut(s)	65, 123, 260
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.