Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0028732

Physical Location & Seq

Genomic Coordinates Reverse (-)

3263904 .. 3265010

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTCAGTAACGAGCGTAAGAGCTGATGAAGAGACAATTGAAAGATTAATCAAGACAGAATACAGTGAACATATTTTCCGGATGGCAATCCAAGAACAAGGTGGAGGCCAGATAATGGACACTTTGGCCAAAATTCAAGAGCGACATGATGCTGTTAAAGATCTTGAGAGAAAGCTTCTGGATTTACAACAGGTGTTTGAAAAATTTCAACTCTGCAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

75

Amino Acids

8.68

Weight (kDa)

5.31

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028732)

Species	Orthologous Gene IDs
malus_domestica	MD00G1027600.v1.1
pyrus_communis	pycom04g03610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	132, 203
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	41, 137, 200, 209
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	2 cut(s)	23, 175
AluI	AGCT	2 cut(s)	23, 175
Alw26I	GTCTC	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	2 cut(s)	106, 126
ApoI	RAATTY	2 cut(s)	132, 203
AseI	ATTAAT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	128
BccI	CCATC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	160
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	86
BseAI	TCCGGA	1 cut(s)	78
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	108, 128
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	108, 128
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	160
BspANI	GGCC	2 cut(s)	108, 128
BspEI	TCCGGA	1 cut(s)	78
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	108, 128
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	70
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	4 cut(s)	23, 108, 128, 175
CviKI_1	RGCY	4 cut(s)	23, 108, 128, 175
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
FaeI	CATG	1 cut(s)	149
FaiI	YATR	2 cut(s)	72, 147
FatI	CATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	108, 128
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	173
HpaII	CCGG	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	5 cut(s)	52, 79, 137, 164, 179
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	92, 122, 164, 176
LweI	GCATC	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	41
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	36, 132, 203
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	128
MroI	TCCGGA	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	47, 156
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	36
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	47, 156
Sau3AI	GATC	1 cut(s)	160
SetI	ASST	4 cut(s)	25, 103, 177, 195
SfaNI	GCATC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	36, 132, 203
TaaI	ACNGT	1 cut(s)	65
TasI	AATT	3 cut(s)	36, 132, 203
Tru1I	TTAA	2 cut(s)	47, 156
Tru9I	TTAA	2 cut(s)	47, 156
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	2 cut(s)	132, 203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.