MD00G1057100.v1.1

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0028752
Physical Location & Seq
Forward (+)
10586540 .. 10589923
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1057100.v1.1.491

Sequence Viewer

Length: 711 bp
ATGGCAACGACAACATATTCAAAGTTTGTAGATGCATTTTTCAAAGGAATTTTCAGTGCACATACATATTTGCGTAGCTTTTTCGAGCAGGTTGGTATTTCTGCCAATTTTCAAAATCAGTCACATCGAGAGATGCAGTATATGCATATTAAAACAAGCATTCCTATTGAAGAGCACGCGAGGAGTATTTTGACGCCTTTTGCCTTCAATGCTTTCCAGCATGAACTTGTGCTCGCCATGCAATATGCTGTATCTGAAATGGCCAATGGGTCATATCTTGTGCAGCATTTTAAGAAGATTGAGGGAGAGCGTCTTGTGATATGGATACCAGAAGAGGAACAGGTCCAGTGTTCCTTTAAAGAGTTTGAATCTTCAGGATTGTTATGCAGACATTCTCTACGTGTGTATGTAGTCAAGAACTACTTTCAGCTTCCTGACAAATACTGTTTAAATAGATGGCGGAAAGAAGGCTCGCTTGATTATTACGATGACCACATTGCTCGGACTAGTGATGAGGAATGGTTTCAAGATTATCAATGCCTTACTGATACCCTGTTAACAGAATCATCAATTACAAAGGAGCGTTCTGATTATGTTCGCAGGGAATTGACAACACAGCTCACAAGGATTCTTAATGAGGTTAGAAATATGCCAGAATGTGAAGGAGTAGCTATGGATCTGACATTTTCCCCTAATTTGAAGCTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

237

Amino Acids

27.86

Weight (kDa)

5.65

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028752)

Species Orthologous Gene IDs
malus_domestica MD00G1057100.v1.1
pyrus_communis pycom05g32670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccII CGCG 1 cut(s) 179
AciI CCGC 1 cut(s) 460
AclWI GGATC 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 8 cut(s) 21, 43, 113, 170, 208, 368, 527, 700
AhlI ACTAGT 1 cut(s) 506
AluBI AGCT 5 cut(s) 78, 430, 619, 671, 703
AluI AGCT 5 cut(s) 78, 430, 619, 671, 703
Alw21I GWGCWC 3 cut(s) 61, 177, 234
Alw44I GTGCAC 1 cut(s) 57
AlwI GGATC 1 cut(s) 684
AoxI GGCC 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 283, 703
ApoI RAATTY 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 343
AvaII GGWCC 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 61
BalI TGGCCA 1 cut(s) 263
Bbv12I GWGCWC 3 cut(s) 61, 177, 234
BbvI GCAGC 2 cut(s) 295, 690
BccI CCATC 1 cut(s) 450
BciVI GTATCC 1 cut(s) 318
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 704
BfuAI ACCTGC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 2 cut(s) 284, 704
BlsI GCNGC 2 cut(s) 285, 705
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmsI GCATC 2 cut(s) 22, 123
BsaAI YACGTR 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 495
BseMI GCAATG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 2 cut(s) 295, 690
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 61, 177, 234
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 3 cut(s) 61, 177, 234
Bsp143I GATC 1 cut(s) 676
BspACI CCGC 1 cut(s) 460
BspANI GGCC 1 cut(s) 263
BspFNI CGCG 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 708
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 684
BspQI GCTCTTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 495
BsrI ACTGG 1 cut(s) 346
BssMI GATC 1 cut(s) 676
BssNI GRCGYC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 2 cut(s) 165, 327
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 177, 234, 473
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 1 cut(s) 679
BstMBI GATC 1 cut(s) 676
BstMWI GCNNNNNNNGC 3 cut(s) 142, 209, 238
BstSFI CTRYAG 1 cut(s) 704
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 295, 690
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 61, 353
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 177, 234, 473
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 2 cut(s) 202, 299
CviAII CATG 2 cut(s) 221, 238
CviJI RGCY 7 cut(s) 78, 263, 430, 471, 619, 671, 703
CviKI_1 RGCY 7 cut(s) 78, 263, 430, 471, 619, 671, 703
DpnI GATC 1 cut(s) 678
DpnII GATC 1 cut(s) 676
DraI TTTAAA 2 cut(s) 358, 450
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 165, 327
EarI CTCTTC 2 cut(s) 165, 327
EciI GGCGGA 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 357
EcoT22I ATGCAT 2 cut(s) 37, 147
FaeI CATG 2 cut(s) 224, 241
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 459, 491
FatI CATG 2 cut(s) 220, 237
Fnu4HI GCNGC 2 cut(s) 284, 704
Fsp4HI GCNGC 2 cut(s) 284, 704
FspBI CTAG 1 cut(s) 507
GluI GCNGC 2 cut(s) 284, 704
HaeIII GGCC 1 cut(s) 263
HgaI GACGC 2 cut(s) 202, 299
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 224, 241
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HinfI GANTC 3 cut(s) 368, 563, 628
HpaI GTTAAC 1 cut(s) 558
Hpy166II GTNNAC 2 cut(s) 59, 558
Hpy188I TCNGA 4 cut(s) 256, 504, 589, 681
Hpy188III TCNNGA 5 cut(s) 128, 375, 415, 434, 527
Hpy8I GTNNAC 2 cut(s) 59, 558
HpyAV CCTTC 3 cut(s) 214, 461, 656
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 8 cut(s) 35, 59, 136, 145, 241, 283, 387, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 209, 238
HpySE526I ACGT 1 cut(s) 400
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 224, 241
KspAI GTTAAC 1 cut(s) 558
Kzo9I GATC 1 cut(s) 676
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 580
Lsp1109I GCAGC 2 cut(s) 295, 690
LweI GCATC 2 cut(s) 22, 123
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 120
MalI GATC 1 cut(s) 678
MboI GATC 1 cut(s) 676
MboII GAAGA 4 cut(s) 182, 307, 344, 363
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 3 cut(s) 61, 177, 234
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 5 cut(s) 48, 106, 570, 605, 694
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 5 cut(s) 174, 295, 328, 508, 631
Mox20I TGGCCA 1 cut(s) 263
Mph1103I ATGCAT 2 cut(s) 37, 147
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 263
MseI TTAA 6 cut(s) 150, 291, 357, 449, 557, 633
Msp20I TGGCCA 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 159
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 142, 209, 238
NdeII GATC 1 cut(s) 676
NlaIII CATG 2 cut(s) 224, 241
NmuCI GTSAC 1 cut(s) 120
NsiI ATGCAT 2 cut(s) 37, 147
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 368, 563, 628
PkrI GCNGC 2 cut(s) 285, 705
Ppu21I YACGTR 1 cut(s) 401
PspPI GGNCC 1 cut(s) 343
PstI CTGCAG 1 cut(s) 708
PsuI RGATCY 1 cut(s) 676
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 6 cut(s) 150, 291, 357, 449, 557, 633
SatI GCNGC 2 cut(s) 284, 704
Sau3AI GATC 1 cut(s) 676
Sau96I GGNCC 1 cut(s) 343
SduI GDGCHC 3 cut(s) 61, 177, 234
SetI ASST 9 cut(s) 80, 93, 345, 403, 432, 621, 642, 673, 705
SfaNI GCATC 2 cut(s) 22, 123
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 1 cut(s) 343
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 5 cut(s) 48, 106, 570, 605, 694
SsiI CCGC 1 cut(s) 460
SspMI CTAG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 84, 127
TasI AATT 5 cut(s) 48, 106, 570, 605, 694
TfiI GAWTC 3 cut(s) 368, 563, 628
Tru1I TTAA 6 cut(s) 150, 291, 357, 449, 557, 633
Tru9I TTAA 6 cut(s) 150, 291, 357, 449, 557, 633
TscAI CASTG 2 cut(s) 61, 353
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 283, 703
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 2 cut(s) 61, 353
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 507
Zsp2I ATGCAT 2 cut(s) 37, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.