MD00G1073000.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0028734
Physical Location & Seq
Forward (+)
14563605 .. 14563997
393 bp
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UTR
Exon/CDS
Intron
MD00G1073000.v1.1.491

Sequence Viewer

Length: 393 bp
ATGCCTTCCAGTGTCATTAGCGCGCATCCCAATCTTGAAGTTATCGGAAGACAAATTGTTAGAAAGTGTAAAGGACTTCCTTTAGCTGCAAAGTCACTCGGGGGTCTCTTACGCTCTAAATTCAGTATGAAAGAATGGGAAAATGTACTTAAGAGTGACATATGGGAGTTGTCAAATAAGGAAAGTAACATTCTGCCAGCTTTATGGTTGAGCTACTATTATTTGCCTCCACATCTTAAGCGTTGTTTTGCCTATTGTTCGATATTTCCCAAAGGTTATGAATTTACAAAATCAAGATTGGTTTTGCTGTGGATGGCCGAAGACTTCTTACGACAAGAAAAGAAGAAACCGTTGGAAGAAGTTGGAGTTGACTACTTCAATGAGCTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

131

Amino Acids

15.11

Weight (kDa)

9.13

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 88 - 130 1.6e-15 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028734)

Species Orthologous Gene IDs
malus_domestica MD00G1073000.v1.1
rosa_multiflora Rmu_co8038980.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 2 cut(s) 119, 281
AfaI GTAC 1 cut(s) 147
AflII CTTAAG 2 cut(s) 149, 236
AgsI TTSAA 2 cut(s) 38, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 4 cut(s) 86, 200, 213, 385
AluI AGCT 4 cut(s) 86, 200, 213, 385
Alw26I GTCTC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 119, 281
AspLEI GCGC 2 cut(s) 23, 25
AvaI CYCGRG 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbsI GAAGAC 2 cut(s) 55, 327
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 386
BfrI CTTAAG 2 cut(s) 149, 236
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 98
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 2 cut(s) 55, 327
BsaI GGTCTC 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 25, 318
BseNI ACTGG 1 cut(s) 9
BsePI GCGCGC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 98
BspANI GGCC 1 cut(s) 317
BspFNI CGCG 1 cut(s) 23
BspTI CTTAAG 2 cut(s) 149, 236
BspTNI GGTCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 9
BssHII GCGCGC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 351
BstAFI CTTAAG 2 cut(s) 149, 236
BstC8I GCNNGC 2 cut(s) 23, 198
BstF5I GGATG 2 cut(s) 25, 318
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 2 cut(s) 23, 25
BstMAI GTCTC 1 cut(s) 110
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 2 cut(s) 55, 327
BstXI CCANNNNNNTGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 2 cut(s) 25, 318
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 23, 198
CfoI GCGC 2 cut(s) 23, 25
Csp6I GTAC 1 cut(s) 146
CviJI RGCY 5 cut(s) 86, 200, 213, 317, 385
CviKI_1 RGCY 5 cut(s) 86, 200, 213, 317, 385
CviQI GTAC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 98
FaiI YATR 6 cut(s) 128, 161, 163, 205, 279, 391
FauNDI CATATG 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 2 cut(s) 12, 325
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 22, 24
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 317
HhaI GCGC 2 cut(s) 23, 25
Hin6I GCGC 2 cut(s) 21, 23
HinP1I GCGC 2 cut(s) 21, 23
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 35, 294
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 89
HspAI GCGC 2 cut(s) 21, 23
LpnPI CCDG 2 cut(s) 22, 210
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 3 cut(s) 93, 155, 185
MboII GAAGA 4 cut(s) 60, 332, 355, 368
MluCI AATT 3 cut(s) 54, 119, 281
MmeI TCCRAC 2 cut(s) 333, 343
MnlI CCTC 1 cut(s) 237
MseI TTAA 2 cut(s) 150, 237
MspCI CTTAAG 2 cut(s) 149, 236
MvnI CGCG 1 cut(s) 23
NdeI CATATG 1 cut(s) 161
NmuCI GTSAC 2 cut(s) 93, 155
PauI GCGCGC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 88
PteI GCGCGC 1 cut(s) 21
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 150, 237
SatI GCNGC 1 cut(s) 87
SetI ASST 5 cut(s) 88, 202, 215, 277, 387
SfaNI GCATC 1 cut(s) 34
SgeI CNNG 8 cut(s) 21, 34, 47, 110, 112, 209, 306, 347
SmlI CTYRAG 2 cut(s) 149, 236
SmoI CTYRAG 2 cut(s) 149, 236
Sse9I AATT 3 cut(s) 54, 119, 281
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 260
TasI AATT 3 cut(s) 54, 119, 281
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 2 cut(s) 150, 237
Tru9I TTAA 2 cut(s) 150, 237
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 2 cut(s) 93, 155
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 2 cut(s) 93, 155
TspDTI ATGAA 2 cut(s) 143, 294
TspRI CASTG 1 cut(s) 16
Vha464I CTTAAG 2 cut(s) 149, 236
XapI RAATTY 2 cut(s) 119, 281
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.