Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8038980.1

Orthogroup ID

OG0028734

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 495

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8038980.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 470 bp

atgggtacccttcaaagtcaacatctaacgccaatatctgaggaagactgctggtcgttgttctcaaaacatgccttcaagaatgcaggtgttaccgcagatccgtcgcttgaagtgattggaagacagattgttcaaaagtgtaaaggactccctttagctgcaaaatcacttgggggtctgttactttctgaaccaaatattgagaaatgggaagaagtattgaacactgacatatgggagttgctagataaaaagaatggcattttgccagctctatggttgagctaccatcatctacctccgcatctgaagcgttgttttgcttactgttccatatttcctcaagattatccgtttcacaaaccggatctggttttgttgtggatggctgaagatctcttaccgtcgaattcgaagactagatttgaacaagttggagagaactactttgatgatctcgtgtcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

156

Amino Acids

17.76

Weight (kDa)

5.44

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1073000.v1.1
rosa_multiflora	Rmu_co8038980.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AciI	CCGC	2 cut(s)	96, 305
AclWI	GGATC	2 cut(s)	95, 378
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	332, 414
AfaI	GTAC	1 cut(s)	7
AgsI	TTSAA	6 cut(s)	14, 79, 113, 137, 226, 431
AhdI	GACNNNNNGTC	1 cut(s)	52
AluBI	AGCT	3 cut(s)	161, 275, 288
AluI	AGCT	3 cut(s)	161, 275, 288
AlwI	GGATC	2 cut(s)	95, 378
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	412
Asp718I	GGTACC	1 cut(s)	5
AsuII	TTCGAA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BauI	CACGAG	1 cut(s)	461
BbsI	GAAGAC	3 cut(s)	51, 130, 425
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	300, 382
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BfaI	CTAG	2 cut(s)	248, 423
BfuAI	ACCTGC	1 cut(s)	77
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	3 cut(s)	51, 130, 425
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	367
BseGI	GGATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	100, 370, 397, 457
BspACI	CCGC	2 cut(s)	96, 305
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	95, 378
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	5
BssMI	GATC	4 cut(s)	100, 370, 397, 457
BssSI	CACGAG	1 cut(s)	461
Bst2BI	CACGAG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	332, 408
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	4 cut(s)	103, 373, 400, 460
BstMBI	GATC	4 cut(s)	100, 370, 397, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	3 cut(s)	51, 130, 425
BstX2I	RGATCY	3 cut(s)	100, 370, 397
BstXI	CCANNNNNNTGG	1 cut(s)	279
BstYI	RGATCY	3 cut(s)	100, 370, 397
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	4 cut(s)	161, 275, 288, 392
CviKI_1	RGCY	4 cut(s)	161, 275, 288, 392
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	4 cut(s)	102, 372, 399, 459
DpnII	GATC	4 cut(s)	100, 370, 397, 457
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	332, 414
EcoRI	GAATTC	1 cut(s)	412
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	72, 236, 238, 280, 338
FatI	CATG	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	248, 423
GluI	GCNGC	1 cut(s)	162
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	3 cut(s)	40, 193, 312
Hpy188III	TCNNGA	2 cut(s)	79, 347
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	2 cut(s)	109, 412
HpyAV	CCTTC	2 cut(s)	20, 85
HpyCH4III	ACNGT	2 cut(s)	332, 408
HpyCH4V	TGCA	2 cut(s)	86, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	100, 370, 397, 457
LpnPI	CCDG	5 cut(s)	37, 72, 285, 359, 381
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	248, 423
MaeIII	GTNAC	2 cut(s)	91, 183
MalI	GATC	4 cut(s)	102, 372, 399, 459
MboI	GATC	4 cut(s)	100, 370, 397, 457
MboII	GAAGA	5 cut(s)	56, 135, 227, 407, 430
MflI	RGATCY	3 cut(s)	100, 370, 397
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	3 cut(s)	34, 312, 354
MspI	CCGG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	4 cut(s)	100, 370, 397, 457
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	7
PsuI	RGATCY	3 cut(s)	100, 370, 397
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	4 cut(s)	100, 370, 397, 457
SchI	GAGTC	1 cut(s)	144
SetI	ASST	5 cut(s)	91, 163, 277, 290, 304
SfaNI	GCATC	1 cut(s)	316
SfuI	TTCGAA	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	96, 305
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	248, 423
TaaI	ACNGT	2 cut(s)	332, 408
TaqI	TCGA	2 cut(s)	410, 416
TasI	AATT	1 cut(s)	412
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	161
TspGWI	ACGGA	2 cut(s)	93, 345
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	2 cut(s)	248, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.