PPR repeat family
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1086300.v1.1 |
| prunus_persica | Prupe.5G104800_v2.0.a1 Prupe.5G104800_v2.0.a1 Prupe.5G104800_v2.0.a1 |
| pyrus_communis | pycom06g08490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AciI | CCGC | 2 cut(s) | 83, 120 |
| AcsI | RAATTY | 1 cut(s) | 320 |
| AfaI | GTAC | 1 cut(s) | 103 |
| AgsI | TTSAA | 5 cut(s) | 63, 73, 93, 205, 225 |
| AhlI | ACTAGT | 1 cut(s) | 8 |
| AluBI | AGCT | 6 cut(s) | 116, 136, 197, 398, 427, 436 |
| AluI | AGCT | 6 cut(s) | 116, 136, 197, 398, 427, 436 |
| Alw26I | GTCTC | 1 cut(s) | 298 |
| ApoI | RAATTY | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 2 cut(s) | 275, 298 |
| BccI | CCATC | 1 cut(s) | 253 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 440, 474 |
| BclI | TGATCA | 1 cut(s) | 184 |
| BcoDI | GTCTC | 1 cut(s) | 298 |
| BcuI | ACTAGT | 1 cut(s) | 8 |
| BfaI | CTAG | 1 cut(s) | 9 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BlpI | GCTNAGC | 1 cut(s) | 270 |
| BmcAI | AGTACT | 1 cut(s) | 103 |
| BmsI | GCATC | 1 cut(s) | 28 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 270 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| BseMII | CTCAG | 2 cut(s) | 123, 284 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BslFI | GGGAC | 1 cut(s) | 369 |
| BsmAI | GTCTC | 1 cut(s) | 298 |
| BsmFI | GGGAC | 1 cut(s) | 369 |
| BsmI | GAATGC | 1 cut(s) | 253 |
| Bsp143I | GATC | 2 cut(s) | 184, 337 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 270 |
| BspACI | CCGC | 2 cut(s) | 83, 120 |
| BspCNI | CTCAG | 2 cut(s) | 124, 283 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssMI | GATC | 2 cut(s) | 184, 337 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 233, 458 |
| BstC8I | GCNNGC | 3 cut(s) | 118, 219, 463 |
| BstDEI | CTNAG | 2 cut(s) | 132, 270 |
| BstKTI | GATC | 2 cut(s) | 187, 340 |
| BstMAI | GTCTC | 1 cut(s) | 298 |
| BstMBI | GATC | 2 cut(s) | 184, 337 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 433 |
| BstNSI | RCATGY | 1 cut(s) | 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 235 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 3 cut(s) | 118, 219, 463 |
| CciI | TCATGA | 1 cut(s) | 430 |
| Csp6I | GTAC | 1 cut(s) | 102 |
| CviAII | CATG | 7 cut(s) | 32, 218, 275, 287, 369, 377, 431 |
| CviJI | RGCY | 9 cut(s) | 69, 116, 136, 197, 239, 398, 427, 436, 442 |
| CviKI_1 | RGCY | 9 cut(s) | 69, 116, 136, 197, 239, 398, 427, 436, 442 |
| CviQI | GTAC | 1 cut(s) | 102 |
| DdeI | CTNAG | 2 cut(s) | 132, 270 |
| DpnI | GATC | 2 cut(s) | 186, 339 |
| DpnII | GATC | 2 cut(s) | 184, 337 |
| FaeI | CATG | 7 cut(s) | 35, 221, 278, 290, 372, 380, 434 |
| FaqI | GGGAC | 1 cut(s) | 369 |
| FatI | CATG | 7 cut(s) | 31, 217, 274, 286, 368, 376, 430 |
| FbaI | TGATCA | 1 cut(s) | 184 |
| FspBI | CTAG | 1 cut(s) | 9 |
| Hin1II | CATG | 7 cut(s) | 35, 221, 278, 290, 372, 380, 434 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HindIII | AAGCTT | 2 cut(s) | 114, 396 |
| HinfI | GANTC | 2 cut(s) | 154, 166 |
| HpaI | GTTAAC | 1 cut(s) | 472 |
| HphI | GGTGA | 2 cut(s) | 275, 298 |
| Hpy166II | GTNNAC | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 2 cut(s) | 298, 342 |
| Hpy188III | TCNNGA | 1 cut(s) | 431 |
| Hpy8I | GTNNAC | 1 cut(s) | 472 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 233, 458 |
| HpyCH4V | TGCA | 1 cut(s) | 380 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 433 |
| HpyF3I | CTNAG | 2 cut(s) | 132, 270 |
| Hsp92II | CATG | 7 cut(s) | 35, 221, 278, 290, 372, 380, 434 |
| Ksp22I | TGATCA | 1 cut(s) | 184 |
| KspAI | GTTAAC | 1 cut(s) | 472 |
| Kzo9I | GATC | 2 cut(s) | 184, 337 |
| LpnPI | CCDG | 7 cut(s) | 122, 128, 162, 176, 338, 348, 366 |
| LweI | GCATC | 1 cut(s) | 28 |
| MaeI | CTAG | 1 cut(s) | 9 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MalI | GATC | 2 cut(s) | 186, 339 |
| MboI | GATC | 2 cut(s) | 184, 337 |
| MboII | GAAGA | 1 cut(s) | 159 |
| MluCI | AATT | 1 cut(s) | 320 |
| MlyI | GAGTC | 1 cut(s) | 160 |
| MseI | TTAA | 5 cut(s) | 111, 171, 390, 410, 471 |
| MslI | CAYNNNNRTG | 2 cut(s) | 36, 311 |
| Mva1269I | GAATGC | 1 cut(s) | 253 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 433 |
| NdeII | GATC | 2 cut(s) | 184, 337 |
| NlaIII | CATG | 7 cut(s) | 35, 221, 278, 290, 372, 380, 434 |
| NspI | RCATGY | 1 cut(s) | 221 |
| PaeI | GCATGC | 1 cut(s) | 221 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PctI | GAATGC | 1 cut(s) | 253 |
| PfeI | GAWTC | 1 cut(s) | 154 |
| PleI | GAGTC | 1 cut(s) | 160 |
| PpsI | GAGTC | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 103 |
| RsaNI | GTAC | 1 cut(s) | 102 |
| RseI | CAYNNNNRTG | 2 cut(s) | 36, 311 |
| SaqAI | TTAA | 5 cut(s) | 111, 171, 390, 410, 471 |
| Sau3AI | GATC | 2 cut(s) | 184, 337 |
| ScaI | AGTACT | 1 cut(s) | 103 |
| SchI | GAGTC | 1 cut(s) | 160 |
| SetI | ASST | 7 cut(s) | 118, 138, 199, 385, 400, 429, 438 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 36, 311 |
| SpeI | ACTAGT | 1 cut(s) | 8 |
| SphI | GCATGC | 1 cut(s) | 221 |
| Sse9I | AATT | 1 cut(s) | 320 |
| SsiI | CCGC | 2 cut(s) | 83, 120 |
| SspMI | CTAG | 1 cut(s) | 9 |
| TaaI | ACNGT | 3 cut(s) | 89, 233, 458 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 1 cut(s) | 320 |
| TatI | WGTACW | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 154 |
| Tru1I | TTAA | 5 cut(s) | 111, 171, 390, 410, 471 |
| Tru9I | TTAA | 5 cut(s) | 111, 171, 390, 410, 471 |
| TspDTI | ATGAA | 3 cut(s) | 303, 357, 419 |
| XapI | RAATTY | 1 cut(s) | 320 |
| XceI | RCATGY | 1 cut(s) | 221 |
| XspI | CTAG | 1 cut(s) | 9 |
| ZrmI | AGTACT | 1 cut(s) | 103 |