pycom06g08490

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0021193
Physical Location & Seq
Forward (+)
13704499 .. 13705525
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08490.2

Sequence Viewer

Length: 861 bp
ATGACAACGTATGGAAGATGCAATTGGATTGAAGAAGCAAAAAGGGCATTTTCTAATACTGACAAGATAAATTCGGTACTTCTTAATTCAATGGCAGCTAGTTTTGTCTGTGCCGGTTGTCATGCTGATGCTATCAATTTGTTCTATACTGCAAGGGGCTTGAAACTTGAAGTGGACTCTTCAACTTTCAGTACTGTCCTTAAAGCTTGTGGTGCTATAACTGAGTTAGAACAGGGACTAGTGGTTCACTCCCTAGCTCTCAAAACTGGATTGGATCAAGGGAGTTTTTTTGTTGAAAGTGCTATTGTTGAAGTTTATTGCAAGTGCGGAAGCATAGGTGATGCAGAAAAGGCGTTTAAGAATGCTTCCACAAGTAATTTGGCTTCTTGGAATGCTATGGTGATGGGATACGCTCAACATGGTTTTCAACATGAACTGTCGGAACTATTCAACAAGATGTCTAAATTTGGAATAAAACCAGATCAGATAACAGATCTGGGACTTCTTACTTCATGTTGCCATGCAGGTCTTGTTAAAGAAGAAAGTCGCGCAAGGAAGCTTCTTGAACTGGAGCCTGAAAACGAAACTGCATATATTTTGCTGTCAAATCTGTATACCTCAGCTGGCACGTGGAGTGCTGTTGGAAAAGGGAGAAAGGAAATGAAGGAAAAAATCGTCTACAAGGAACCTGGTTCTAGTTGGCTTCAAGTTGGAGGATCGCTTCATTACTTTTTTGCTGATGACAAATTATATTCTGGGAATACAGAAATACATACTGAACTAATAAGGTTGTACCTGCAGATGTCGGTGACAACAAAATTGGAAAATGATGGTCCGAGTTTAATGATCTTTGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

287

Amino Acids

31.5

Weight (kDa)

5.69

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021193)

Species Orthologous Gene IDs
malus_domestica MD00G1086300.v1.1
prunus_persica Prupe.5G104800_v2.0.a1 Prupe.5G104800_v2.0.a1 Prupe.5G104800_v2.0.a1
pyrus_communis pycom06g08490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 515, 804
AccI GTMKAC 2 cut(s) 614, 678
AccII CGCG 1 cut(s) 549
AciI CCGC 1 cut(s) 327
AclWI GGATC 2 cut(s) 282, 724
AcsI RAATTY 2 cut(s) 70, 464
AcvI CACGTG 1 cut(s) 630
AfaI GTAC 3 cut(s) 78, 193, 794
AhlI ACTAGT 1 cut(s) 238
AjnI CCWGG 1 cut(s) 688
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 5 cut(s) 98, 206, 257, 559, 623
AluI AGCT 5 cut(s) 98, 206, 257, 559, 623
AlwI GGATC 2 cut(s) 282, 724
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 70, 464
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 833
AsuHPI GGTGA 3 cut(s) 350, 412, 820
AvaII GGWCC 1 cut(s) 833
BarI GAAGNNNNNNTAC 2 cut(s) 367, 399
BbrPI CACGTG 1 cut(s) 630
BbvCI CCTCAGC 1 cut(s) 619
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 397, 824
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 1 cut(s) 401
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 4 cut(s) 99, 239, 254, 696
BfmI CTRYAG 1 cut(s) 797
BfuAI ACCTGC 2 cut(s) 515, 804
BfuI GTATCC 1 cut(s) 401
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 833
BmiI GGNNCC 2 cut(s) 573, 687
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 3 cut(s) 8, 118, 331
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 619
BsaAI YACGTR 1 cut(s) 630
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 271, 573
BseBI CCWGG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 213, 633
BseNI ACTGG 2 cut(s) 271, 573
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 549
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 249, 513
BsmFI GGGAC 2 cut(s) 249, 513
BsmI GAATGC 2 cut(s) 367, 397
Bsp143I GATC 5 cut(s) 274, 481, 493, 716, 846
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 214, 632
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 573, 687
BspMAI CTGCAG 1 cut(s) 801
BspMI ACCTGC 2 cut(s) 515, 804
BspPI GGATC 2 cut(s) 282, 724
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 271, 573
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 5 cut(s) 274, 481, 493, 716, 846
BssNAI GTATAC 1 cut(s) 615
Bst1107I GTATAC 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 196, 438
Bst6I CTCTTC 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 2 cut(s) 222, 619
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 5 cut(s) 277, 484, 496, 719, 849
BstMBI GATC 5 cut(s) 274, 481, 493, 716, 846
BstMWI GCNNNNNNNGC 3 cut(s) 44, 212, 350
BstNI CCWGG 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 688
BstSFI CTRYAG 1 cut(s) 797
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BstZ17I GTATAC 1 cut(s) 615
BsuI GTATCC 1 cut(s) 401
BveI ACCTGC 2 cut(s) 515, 804
Cac8I GCNNGC 1 cut(s) 625
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 833
CsiI ACCWGGT 1 cut(s) 688
Csp6I GTAC 3 cut(s) 77, 192, 793
CviAII CATG 5 cut(s) 122, 419, 431, 513, 521
CviJI RGCY 9 cut(s) 98, 159, 206, 257, 383, 559, 574, 623, 703
CviKI_1 RGCY 9 cut(s) 98, 159, 206, 257, 383, 559, 574, 623, 703
CviQI GTAC 3 cut(s) 77, 192, 793
DdeI CTNAG 2 cut(s) 222, 619
DpnI GATC 5 cut(s) 276, 483, 495, 718, 848
DpnII GATC 5 cut(s) 274, 481, 493, 716, 846
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 833
Eco72I CACGTG 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 688
FaeI CATG 5 cut(s) 125, 422, 434, 516, 524
FaqI GGGAC 2 cut(s) 249, 513
FatI CATG 5 cut(s) 121, 418, 430, 512, 520
FauNDI CATATG 1 cut(s) 857
FblI GTMKAC 2 cut(s) 614, 678
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 4 cut(s) 99, 239, 254, 696
GlaI GCGC 1 cut(s) 550
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 590
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 551
Hin1II CATG 5 cut(s) 125, 422, 434, 516, 524
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 2 cut(s) 204, 557
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 350, 412, 820
Hpy166II GTNNAC 4 cut(s) 175, 247, 615, 679
Hpy188I TCNGA 3 cut(s) 442, 486, 837
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 4 cut(s) 175, 247, 615, 679
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 2 cut(s) 196, 438
HpyCH4IV ACGT 2 cut(s) 8, 629
HpyCH4V TGCA 7 cut(s) 21, 152, 321, 344, 524, 590, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 212, 350
HpyF3I CTNAG 2 cut(s) 222, 619
HpySE526I ACGT 2 cut(s) 8, 629
Hsp92II CATG 5 cut(s) 125, 422, 434, 516, 524
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 5 cut(s) 274, 481, 493, 716, 846
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 3 cut(s) 8, 118, 331
MabI ACCWGGT 1 cut(s) 688
MaeI CTAG 4 cut(s) 99, 239, 254, 696
MaeII ACGT 2 cut(s) 8, 629
MaeIII GTNAC 1 cut(s) 808
MalI GATC 5 cut(s) 276, 483, 495, 718, 848
MboI GATC 5 cut(s) 274, 481, 493, 716, 846
MboII GAAGA 4 cut(s) 27, 44, 171, 551
MfeI CAATTG 1 cut(s) 22
MflI RGATCY 1 cut(s) 493
MluCI AATT 8 cut(s) 22, 70, 85, 136, 376, 464, 746, 818
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 3 cut(s) 420, 622, 691
MnlI CCTC 2 cut(s) 628, 707
MseI TTAA 5 cut(s) 84, 201, 357, 534, 842
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 22
Mva1269I GAATGC 2 cut(s) 367, 397
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 44, 212, 350
NdeI CATATG 1 cut(s) 857
NdeII GATC 5 cut(s) 274, 481, 493, 716, 846
NlaIII CATG 5 cut(s) 125, 422, 434, 516, 524
NlaIV GGNNCC 2 cut(s) 573, 687
NmuCI GTSAC 1 cut(s) 808
PctI GAATGC 2 cut(s) 367, 397
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 630
PmlI CACGTG 1 cut(s) 630
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 688
PspCI CACGTG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 573, 687
PspPI GGNCC 1 cut(s) 833
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 3 cut(s) 78, 193, 794
RsaNI GTAC 3 cut(s) 77, 192, 793
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 5 cut(s) 84, 201, 357, 534, 842
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 5 cut(s) 274, 481, 493, 716, 846
Sau96I GGNCC 1 cut(s) 833
ScaI AGTACT 1 cut(s) 193
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 690
SexAI ACCWGGT 1 cut(s) 688
SfaNI GCATC 3 cut(s) 8, 118, 331
SfcI CTRYAG 1 cut(s) 797
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 1 cut(s) 126
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 8 cut(s) 22, 70, 85, 136, 376, 464, 746, 818
SsiI CCGC 1 cut(s) 327
SspMI CTAG 4 cut(s) 99, 239, 254, 696
StyD4I CCNGG 1 cut(s) 688
TaaI ACNGT 2 cut(s) 196, 438
TaiI ACGT 2 cut(s) 11, 632
TasI AATT 8 cut(s) 22, 70, 85, 136, 376, 464, 746, 818
TatI WGTACW 1 cut(s) 191
Tru1I TTAA 5 cut(s) 84, 201, 357, 534, 842
Tru9I TTAA 5 cut(s) 84, 201, 357, 534, 842
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 4 cut(s) 447, 501, 677, 713
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 2 cut(s) 70, 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XmiI GTMKAC 2 cut(s) 614, 678
XspI CTAG 4 cut(s) 99, 239, 254, 696
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.