Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0024431

Physical Location & Seq

Genomic Coordinates Forward (+)

19651875 .. 19653887

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1094000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATGATCGGTTTTCTGGTGGTTTCAATATCACGATCTTGTGCTTATGGAAAGCCGGAAGTACCTTGTTTTTTCATTTTTGGTGATTCATTGCTCGATAATGGCAACAATAACTTCCTCCCAACGTTGAGAGTGAACTACCTCCCCTACGGCATTGATTATCCCACCGGACCAACCGGAAGATTTTGCAATGGTCGAACTCCAGTTGACGTACTTGCTGAACTTTTGGGCTTTGAGAATCACATCCCACCATTTGCAACTACTTTCGGCCTGGCCACACTTAGAGGCTTGAATTACGCATCAGGCACTTCAGGAATTCGAGCGGAAACAGGCTCTCAGTTGGGTGTTAATGTCAACTTTGATCGGCAGATACAGAACCACAAATCTGCAGTCTTGCGCATTGCTTCCATACTGAGAAGTAAAGAATCAGCTATGAAGTATTTAAACGAGTGCTTATATTATGTGGGAATGGGTAACAATGATTACCTTAACAATTACTTACAGCCGCGGTTTTTTAACACCAGCCGCATATATACCCTTGAACAATATGCTGCAGTTCTTGTTAGACAATATTCCAGCCAAATCATGACTTTGTACAAGTATGGAGCGAGGAAGTTTGCCTTGGTTGGAGTGCAAGATATAGCAAATACGACCTATGCTTTTAACCAAAATCTTGTATCCCTGGTAGAAAAGCTCAACGCCGATCTTGGAGATGCAAGGTTCATCTATGTCAACTCTTCCTCAGTGACACGTTCAACTTCTGCTGGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

258

Amino Acids

28.55

Weight (kDa)

8.97

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	25 - 247	1e-16	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024431)

Species	Orthologous Gene IDs
malus_domestica	MD00G1094000.v1.1 MD05G1293600.v1.1
prunus_persica	Prupe.4G070600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	508
AciI	CCGC	4 cut(s)	323, 506, 508, 526
AclI	AACGTT	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	3 cut(s)	63, 213, 596
AflIII	ACRYGT	1 cut(s)	749
AgsI	TTSAA	4 cut(s)	27, 292, 542, 756
AjnI	CCWGG	2 cut(s)	270, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	2 cut(s)	431, 694
AluI	AGCT	2 cut(s)	431, 694
AoxI	GGCC	2 cut(s)	268, 273
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	315
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	538
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	272, 683
BciVI	GTATCC	1 cut(s)	688
BfmI	CTRYAG	2 cut(s)	387, 552
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	3 cut(s)	506, 526, 552
BlsI	GCNGC	3 cut(s)	507, 527, 553
Bme1390I	CCNGG	2 cut(s)	272, 683
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	272, 683
BmsI	GCATC	2 cut(s)	308, 703
BpmI	CTGGAG	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	506, 621, 681
BsaWI	WCCGGW	2 cut(s)	167, 176
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	3 cut(s)	89, 196, 399
BseBI	CCWGG	2 cut(s)	272, 683
BseDI	CCNNGG	3 cut(s)	506, 621, 681
BseGI	GGATG	1 cut(s)	243
BseMI	GCAATG	3 cut(s)	89, 196, 399
BseMII	CTCAG	3 cut(s)	350, 404, 756
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	270, 275
BsiSI	CCGG	3 cut(s)	56, 168, 177
BsnI	GGCC	2 cut(s)	270, 275
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	4 cut(s)	6, 35, 361, 703
BspACI	CCGC	4 cut(s)	323, 506, 508, 526
BspANI	GGCC	2 cut(s)	270, 275
BspCNI	CTCAG	3 cut(s)	349, 405, 755
BspFNI	CGCG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	585
BspMAI	CTGCAG	2 cut(s)	391, 556
BsrBI	CCGCTC	1 cut(s)	323
BsrDI	GCAATG	3 cut(s)	89, 196, 399
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	506, 621, 681
BssMI	GATC	4 cut(s)	6, 35, 361, 703
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	272, 683
Bst6I	CTCTTC	1 cut(s)	742
BstAUI	TGTACA	1 cut(s)	594
BstDEI	CTNAG	4 cut(s)	281, 336, 413, 742
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	9, 38, 364, 706
BstMBI	GATC	4 cut(s)	6, 35, 361, 703
BstNI	CCWGG	2 cut(s)	272, 683
BstSCI	CCNGG	2 cut(s)	270, 681
BstSFI	CTRYAG	2 cut(s)	387, 552
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	270, 275
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	750
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	509
Csp6I	GTAC	3 cut(s)	62, 212, 595
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	3 cut(s)	62, 212, 595
DdeI	CTNAG	4 cut(s)	281, 336, 413, 742
DpnI	GATC	4 cut(s)	8, 37, 363, 705
DpnII	GATC	4 cut(s)	6, 35, 361, 703
DraI	TTTAAA	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	270, 681
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	1 cut(s)	589
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	1 cut(s)	585
Fnu4HI	GCNGC	3 cut(s)	506, 526, 552
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	506, 526, 552
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	3 cut(s)	506, 526, 552
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	270, 275
HapII	CCGG	3 cut(s)	56, 168, 177
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	3 cut(s)	208, 355, 733
HindII	GTYRAC	3 cut(s)	208, 355, 733
HinfI	GANTC	3 cut(s)	86, 238, 425
HpaII	CCGG	3 cut(s)	56, 168, 177
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	4 cut(s)	136, 208, 355, 733
Hpy188III	TCNNGA	3 cut(s)	33, 312, 586
Hpy8I	GTNNAC	4 cut(s)	136, 208, 355, 733
HpyCH4IV	ACGT	3 cut(s)	125, 210, 751
HpyCH4V	TGCA	6 cut(s)	189, 257, 389, 554, 634, 716
HpyF3I	CTNAG	4 cut(s)	281, 336, 413, 742
HpySE526I	ACGT	3 cut(s)	125, 210, 751
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	1 cut(s)	397
KspI	CCGCGG	1 cut(s)	509
Kzo9I	GATC	4 cut(s)	6, 35, 361, 703
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	308, 703
MaeII	ACGT	3 cut(s)	125, 210, 751
MaeIII	GTNAC	2 cut(s)	473, 745
MalI	GATC	4 cut(s)	8, 37, 363, 705
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	4 cut(s)	6, 35, 361, 703
MboII	GAAGA	2 cut(s)	192, 729
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	3 cut(s)	292, 315, 493
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	5 cut(s)	128, 152, 278, 603, 751
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	5 cut(s)	348, 443, 489, 516, 663
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	3 cut(s)	56, 168, 177
MspR9I	CCNGG	2 cut(s)	272, 683
MvaI	CCWGG	2 cut(s)	272, 683
MvnI	CGCG	1 cut(s)	508
NdeII	GATC	4 cut(s)	6, 35, 361, 703
NlaIII	CATG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	745
NsbI	TGCGCA	1 cut(s)	398
PagI	TCATGA	1 cut(s)	585
PfeI	GAWTC	3 cut(s)	86, 238, 425
PkrI	GCNGC	3 cut(s)	507, 527, 553
Psp1406I	AACGTT	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	270, 681
PspGI	CCWGG	2 cut(s)	270, 681
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	2 cut(s)	391, 556
RsaI	GTAC	3 cut(s)	63, 213, 596
RsaNI	GTAC	3 cut(s)	62, 212, 595
SacII	CCGCGG	1 cut(s)	509
SaqAI	TTAA	5 cut(s)	348, 443, 489, 516, 663
SatI	GCNGC	3 cut(s)	506, 526, 552
Sau3AI	GATC	4 cut(s)	6, 35, 361, 703
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	272, 683
SfaNI	GCATC	2 cut(s)	308, 703
SfcI	CTRYAG	2 cut(s)	387, 552
Sfr303I	CCGCGG	1 cut(s)	509
SgrBI	CCGCGG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	170
Sse9I	AATT	3 cut(s)	292, 315, 493
SsiI	CCGC	4 cut(s)	323, 506, 508, 526
SspI	AATATT	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	270, 681
StyI	CCWWGG	1 cut(s)	621
TaiI	ACGT	3 cut(s)	128, 213, 754
TaqI	TCGA	3 cut(s)	96, 196, 319
TasI	AATT	3 cut(s)	292, 315, 493
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	2 cut(s)	508, 528
TfiI	GAWTC	3 cut(s)	86, 238, 425
Tru1I	TTAA	5 cut(s)	348, 443, 489, 516, 663
Tru9I	TTAA	5 cut(s)	348, 443, 489, 516, 663
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	64, 78, 449, 712
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.