Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0028751

Physical Location & Seq

Genomic Coordinates Forward (+)

20111572 .. 20115592

Gene Structure 4021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1096400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGAATGAGTATCGCAGCGATGGTTTACTGCATGATGCTCTGCACATAGATGATGAATTCAAGAAGAAACTCCCGTGGAATGCTCGGATTAGAATGGCACGTTTAGAAAAGCTTGGAGAGAGAAGAGAGAAGGAGGCTAACAGAAAGAAAAGTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007623 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

54

Amino Acids

6.39

Weight (kDa)

9.77

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028751)

Species	Orthologous Gene IDs
malus_domestica	MD00G1096400.v1.1
pyrus_communis	pycom13g17940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	14
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
BmsI	GCATC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	33
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	2 cut(s)	112, 137
CviKI_1	RGCY	2 cut(s)	112, 137
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 47
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	31, 43
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	100
MboII	GAAGA	2 cut(s)	76, 135
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	35
PctI	GAATGC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	48
SatI	GCNGC	1 cut(s)	16
SetI	ASST	2 cut(s)	103, 114
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	7 cut(s)	44, 73, 85, 87, 96, 111, 125
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	103
TasI	AATT	1 cut(s)	56
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	17, 69
XapI	RAATTY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.