Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028751

Physical Location & Seq

Genomic Coordinates Forward (+)

13890167 .. 13891366

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATTTTACTAGGCTACTTGAAGTCAAGAGAAATTGGACGAGGGCTTCTAGTCAGCAGAAAGATGACGAGTTTCTTGACCTGGTATGCTAATGTTGTCGAGCTTATGGGTTACTGTGCAGAGCATGGTCAAAGGCTTCTGATCTACGAGTATTGCAGTAATGGTTCACTGCATGATGCTCTGCACATAGATGATGAACTCAAGAAGAAACTCCCGTGGAATCCTCGTTTGGAAATTCGAATGGCACTTGGAGCTGCAGGAGCCTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007623 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

91

Amino Acids

10.25

Weight (kDa)

7.81

Isoelectric Point (pI)

21.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028751)

Species	Orthologous Gene IDs
malus_domestica	MD00G1096400.v1.1
pyrus_communis	pycom13g17940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	103, 254
AluI	AGCT	2 cut(s)	103, 254
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	234
AsuII	TTCGAA	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	82
BfaI	CTAG	2 cut(s)	11, 50
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	2 cut(s)	138, 167
Bsp119I	TTCGAA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	265
BstDSI	CCRYGG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 260
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
CsiI	ACCWGGT	1 cut(s)	80
CviAII	CATG	2 cut(s)	125, 173
CviJI	RGCY	6 cut(s)	15, 46, 103, 136, 254, 263
CviKI_1	RGCY	6 cut(s)	15, 46, 103, 136, 254, 263
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	128, 176
FaiI	YATR	5 cut(s)	87, 107, 126, 174, 188
FatI	CATG	2 cut(s)	124, 172
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	2 cut(s)	11, 50
GluI	GCNGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	128, 176
HinfI	GANTC	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	27, 76, 202
Hpy8I	GTNNAC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	5 cut(s)	119, 156, 172, 184, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 260
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	128, 176
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	251, 260
LpnPI	CCDG	3 cut(s)	67, 94, 243
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	80
MaeI	CTAG	2 cut(s)	11, 50
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	217
MluCI	AATT	2 cut(s)	33, 234
MnlI	CCTC	2 cut(s)	35, 234
MslI	CAYNNNNRTG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	251, 260
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	128, 176
NlaIV	GGNNCC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	3 cut(s)	83, 105, 256
SexAI	ACCWGGT	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	33, 234
SspMI	CTAG	2 cut(s)	11, 50
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	99, 238
TasI	AATT	2 cut(s)	33, 234
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	174
XapI	RAATTY	1 cut(s)	234
XspI	CTAG	2 cut(s)	11, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.