MD00G1097000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
20363984 .. 20367056
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1097000.v1.1.491

Sequence Viewer

Length: 291 bp
ATGTGCAACCATCTTCTGAAGATGAAGACGTCTGCCCTACATATCTGGATGAATACACCAAAAAAATCCAAAAGTCAAACGACATGTCCTGTCCTCATCATTTTCAACTTGGTTGCAATAATAAATGGTTGGCAAAAAACGAAAGATGGCCAATTTGTGGAAGGTGGAAGGATTTGGCAGAATCAGATGTTTATGACGAGAACAGAAGAGTTGCCACAATGCTTGAGGTTGCCAACGCCAAGAGTTGTAGCTGGTTCAACCCGAAGAAGGGTTAATTTTTTTACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.15

Weight (kDa)

10.72

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0028739)

Species Orthologous Gene IDs
malus_domestica MD00G1097000.v1.1
pyrus_communis pycom03g01030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 29
AfiI CCNNNNNNNGG 3 cut(s) 157, 267, 268
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 106, 258
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
BalI TGGCCA 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 32
BccI CCATC 2 cut(s) 18, 140
BpiI GAAGAC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 267, 268
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 157, 267, 268
BshFI GGCC 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 157, 267, 268
BsnI GGCC 1 cut(s) 150
BspANI GGCC 1 cut(s) 150
BssNI GRCGYC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 1 cut(s) 84
CviJI RGCY 2 cut(s) 150, 251
CviKI_1 RGCY 2 cut(s) 150, 251
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 38
FaeI CATG 1 cut(s) 87
FaiI YATR 3 cut(s) 42, 85, 194
FatI CATG 1 cut(s) 83
FokI GGATG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 87
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 18, 186
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 155, 162, 261
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 6, 116
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 87
LpnPI CCDG 3 cut(s) 31, 102, 237
MaeII ACGT 1 cut(s) 29
MboII GAAGA 5 cut(s) 5, 31, 37, 218, 276
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 152, 274
MluNI TGGCCA 1 cut(s) 150
MnlI CCTC 2 cut(s) 104, 219
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 150
NlaIII CATG 1 cut(s) 87
NspI RCATGY 1 cut(s) 87
PciI ACATGT 1 cut(s) 83
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 157
PscI ACATGT 1 cut(s) 83
SaqAI TTAA 1 cut(s) 273
SetI ASST 4 cut(s) 32, 166, 230, 253
SgeI CNNG 9 cut(s) 58, 96, 101, 121, 210, 235, 252, 264, 273
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 2 cut(s) 152, 274
TaiI ACGT 1 cut(s) 32
TasI AATT 2 cut(s) 152, 274
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 38, 65
Van91I CCANNNNNTGG 1 cut(s) 157
XceI RCATGY 1 cut(s) 87
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.