pycom03g01030

Anaphase-promoting complex subunit 11 RING-H2 finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
831615 .. 832701
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01030.3

Sequence Viewer

Length: 276 bp
ATGGAGTATGGGGATGATGCTGAAGACGAATCTGAGAACTCGGAAAAGGCTTTGGCAACAAAACTTGCATATGGACTAATGTGCAACCATCTTCTAAAGATGAAGACGTCTGTCCTATGTATCTGGATGAATACACCAAAAAAATCCAAAAGTCAAACGACATGTCCTCATCATTTTCAACTTGGTTGCAATAATGAATGGTTGGCAAAAAACGAAAGATGGCCAATTTGTGGAAGGATGGAGGTGGAAGGATTTGGAAGAATCAGATCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.45

Weight (kDa)

6.81

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028739)

Species Orthologous Gene IDs
malus_domestica MD00G1097000.v1.1
pyrus_communis pycom03g01030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 1 cut(s) 179
AoxI GGCC 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
BalI TGGCCA 1 cut(s) 223
BbsI GAAGAC 2 cut(s) 30, 110
BccI CCATC 3 cut(s) 96, 213, 232
BglII AGATCT 1 cut(s) 266
BmsI GCATC 1 cut(s) 7
BoxI GACNNNNGTC 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 30, 110
BsaHI GRCGYC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseGI GGATG 3 cut(s) 19, 132, 243
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 266
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 25
BssMI GATC 1 cut(s) 266
BssNI GRCGYC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 3 cut(s) 19, 132, 243
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 110
BstV2I GAAGAC 2 cut(s) 30, 110
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 19, 132, 243
CviAII CATG 1 cut(s) 162
CviJI RGCY 2 cut(s) 50, 223
CviKI_1 RGCY 2 cut(s) 50, 223
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 42
FaeI CATG 1 cut(s) 165
FaiI YATR 6 cut(s) 9, 70, 72, 118, 163, 274
FatI CATG 1 cut(s) 161
FauNDI CATATG 1 cut(s) 70
FokI GGATG 3 cut(s) 26, 139, 250
HaeIII GGCC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 1 cut(s) 165
HinfI GANTC 2 cut(s) 29, 261
Hpy188I TCNGA 3 cut(s) 34, 43, 266
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 228, 242
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 68, 84, 189
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 165
Kzo9I GATC 1 cut(s) 266
LpnPI CCDG 1 cut(s) 109
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 107
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 4 cut(s) 35, 83, 115, 270
MflI RGATCY 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 223
MluCI AATT 1 cut(s) 225
MluNI TGGCCA 1 cut(s) 223
MnlI CCTC 2 cut(s) 177, 235
Mox20I TGGCCA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 223
Msp20I TGGCCA 1 cut(s) 223
NdeI CATATG 1 cut(s) 70
NdeII GATC 1 cut(s) 266
NlaIII CATG 1 cut(s) 165
NspI RCATGY 1 cut(s) 165
PciI ACATGT 1 cut(s) 161
PfeI GAWTC 2 cut(s) 29, 261
PflMI CCANNNNNTGG 1 cut(s) 230
PscI ACATGT 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 266
Sau3AI GATC 1 cut(s) 266
SetI ASST 2 cut(s) 110, 246
SfaNI GCATC 1 cut(s) 7
SgeI CNNG 5 cut(s) 52, 77, 136, 174, 194
Sse9I AATT 1 cut(s) 225
TaiI ACGT 1 cut(s) 110
TasI AATT 1 cut(s) 225
TfiI GAWTC 2 cut(s) 29, 261
TspDTI ATGAA 3 cut(s) 116, 143, 210
Van91I CCANNNNNTGG 1 cut(s) 230
XceI RCATGY 1 cut(s) 165
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.