MD00G1160000.v1.1

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0028736
Physical Location & Seq
Forward (+)
35392558 .. 35394654
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1160000.v1.1.491

Sequence Viewer

Length: 969 bp
ATGTTTGTGGAGTTGAAATGCCATTATGCCGCATATAATAGTTCTGTAATACTACTGTATGAGTTCCTAGGTACTTTTGGTTTACATTGGAATGAAATTATTCAAAAGTCTGGCGCTAGGTTGGGGAGCTTATATATTATTGGAAAGCCGATCTCAATGAATCTGTATGTGTCCAAGAACCCAGAGCTGCTGAAAAAGATTGTTGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCTATTTGCATTTCTCCACCAACGGATACTGTTATTACTTGTTGTGCTCACATTTTTTGCCAAGCTTGTATTCTGAAAACCCTTCAGCGCACAAAACCCTGCTGTCCCCTTTGTCGCCGTGCTTTATCACATTCTGATCTGTTCTCAGCCCCTCAAACAACTTCTGACAGTGACAACACAGTATCATCGAAAACAACCATGTCTTCAAAAGTAAATGCTCTCTTAAAACTTCTTGTTGCATCGAGGGAGCAAAACCCACTTACGAAATCAGTAGTGTTTTCCCAGTTCCGAAAGATGCTGATATATCTTGAAGAGCCACTGAAATCAGCTGGTTTTAAGACTTTGCGCTTAGATGGGTCTATGAATGCAAAGAAAAGGGCACAAGTAATCAAAGAATTTGGGGTGACGGGACAAGATGTGCCCACAATTTTGCTTGCAAGTCTCAAGGCTTCAGGAACAGGTATAAACCTTACAGCTGCAAATAGAGTGTATTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAGGCAATGGATCGTGTTCACCGGATCGGGCAAAAGGAAGATGTGAAGATTGTGAGGTTGATTGCTCGAAACAGCATTGAAGAGAGGATATTAGAGTTGCAAGACAAAAAGAAGAAACTTGCAAAGGAAGCTTTCCAGAGGAAGGCTGCAAAGGATCGGAGGGACGTAGGGGCTGAGGATCTTCTTGGCCTCATGGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

323

Amino Acids

36.01

Weight (kDa)

9.14

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 79 - 117 4e-06 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 149 - 265 3.6e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028736)

Species Orthologous Gene IDs
malus_domestica MD00G1160000.v1.1
pyrus_communis pycom15g12570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AclWI GGATC 4 cut(s) 783, 797, 927, 951
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 2 cut(s) 305, 672
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 907
AgsI TTSAA 5 cut(s) 16, 104, 444, 548, 845
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 6 cut(s) 129, 187, 302, 566, 713, 896
AluI AGCT 6 cut(s) 129, 187, 302, 566, 713, 896
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 4 cut(s) 783, 797, 927, 951
AoxI GGCC 1 cut(s) 952
ApeKI GCWGC 4 cut(s) 187, 211, 713, 911
ApoI RAATTY 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 3 cut(s) 116, 327, 585
AsuHPI GGTGA 3 cut(s) 233, 652, 776
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 2 cut(s) 619, 660
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 4 cut(s) 174, 198, 700, 898
BccI CCATC 2 cut(s) 212, 584
BceAI ACGGC 1 cut(s) 339
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 2 cut(s) 68, 117
BfoI RGCGCY 1 cut(s) 117
BfuI GTATCC 1 cut(s) 256
BglI GCCNNNNNGGC 1 cut(s) 960
BisI GCNGC 5 cut(s) 30, 188, 212, 714, 912
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 5 cut(s) 31, 189, 213, 715, 913
BmiI GGNNCC 2 cut(s) 738, 749
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 2 cut(s) 485, 522
BmuI ACTGGG 1 cut(s) 514
BpiI GAAGAC 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 67, 740
BsaWI WCCGGW 1 cut(s) 786
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 907
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 777
BseDI CCNNGG 2 cut(s) 67, 740
BseLI CCNNNNNNNGG 1 cut(s) 907
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 396, 930
BseNI ACTGG 1 cut(s) 520
BseSI GKGCMC 2 cut(s) 619, 660
BseXI GCAGC 4 cut(s) 174, 198, 700, 898
BseYI CCCAGC 1 cut(s) 751
BshFI GGCC 1 cut(s) 954
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 787
BslFI GGGAC 3 cut(s) 327, 660, 941
BslI CCNNNNNNNGG 1 cut(s) 907
BsmAI GTCTC 1 cut(s) 683
BsmFI GGGAC 3 cut(s) 327, 660, 941
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 1 cut(s) 954
Bsp1286I GDGCHC 3 cut(s) 286, 619, 660
Bsp143I GATC 6 cut(s) 150, 373, 775, 789, 919, 943
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 954
BspCNI CTCAG 2 cut(s) 395, 931
BspLI GGNNCC 2 cut(s) 738, 749
BspPI GGATC 4 cut(s) 783, 797, 927, 951
BspQI GCTCTTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 67, 740
BssMI GATC 6 cut(s) 150, 373, 775, 789, 919, 943
BssT1I CCWWGG 2 cut(s) 67, 740
Bst4CI ACNGT 5 cut(s) 57, 236, 268, 407, 418
Bst6I CTCTTC 2 cut(s) 543, 840
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 382, 586, 939
BstDSI CCRYGG 1 cut(s) 740
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 3 cut(s) 116, 327, 585
BstKTI GATC 6 cut(s) 153, 376, 778, 792, 922, 946
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 6 cut(s) 150, 373, 775, 789, 919, 943
BstMWI GCNNNNNNNGC 2 cut(s) 893, 960
BstSLI GKGCMC 2 cut(s) 619, 660
BstV1I GCAGC 4 cut(s) 174, 198, 700, 898
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 954
BtgI CCRYGG 1 cut(s) 740
BtsIMutI CAGTG 2 cut(s) 412, 554
Cac8I GCNNGC 1 cut(s) 672
CfoI GCGC 3 cut(s) 116, 327, 585
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 436, 741, 958
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 382, 586, 939
DpnI GATC 6 cut(s) 152, 375, 777, 791, 921, 945
DpnII GATC 6 cut(s) 150, 373, 775, 789, 919, 943
Eam1104I CTCTTC 2 cut(s) 543, 840
EarI CTCTTC 2 cut(s) 543, 840
Eco130I CCWWGG 2 cut(s) 67, 740
Eco57I CTGAAG 2 cut(s) 305, 672
EcoT14I CCWWGG 2 cut(s) 67, 740
ErhI CCWWGG 2 cut(s) 67, 740
FaeI CATG 3 cut(s) 439, 744, 961
FaqI GGGAC 3 cut(s) 327, 660, 941
FatI CATG 3 cut(s) 435, 740, 957
Fnu4HI GCNGC 5 cut(s) 30, 188, 212, 714, 912
Fsp4HI GCNGC 5 cut(s) 30, 188, 212, 714, 912
FspBI CTAG 2 cut(s) 68, 117
GlaI GCGC 3 cut(s) 115, 326, 584
GluI GCNGC 5 cut(s) 30, 188, 212, 714, 912
GsaI CCCAGC 1 cut(s) 755
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 954
HapII CCGG 1 cut(s) 787
HhaI GCGC 3 cut(s) 116, 327, 585
Hin1II CATG 3 cut(s) 439, 744, 961
Hin6I GCGC 3 cut(s) 114, 325, 583
HinP1I GCGC 3 cut(s) 114, 325, 583
HindIII AAGCTT 2 cut(s) 300, 894
HinfI GANTC 1 cut(s) 160
HpaII CCGG 1 cut(s) 787
HphI GGTGA 3 cut(s) 233, 652, 776
Hpy166II GTNNAC 2 cut(s) 83, 784
Hpy188I TCNGA 5 cut(s) 312, 373, 403, 527, 924
Hpy188III TCNNGA 3 cut(s) 545, 690, 901
Hpy8I GTNNAC 2 cut(s) 83, 784
HpyAV CCTTC 2 cut(s) 329, 901
HpyCH4III ACNGT 5 cut(s) 57, 236, 268, 407, 418
HpyCH4IV ACGT 1 cut(s) 930
HpyCH4V TGCA 9 cut(s) 214, 246, 476, 605, 674, 716, 865, 887, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 893, 960
HpyF3I CTNAG 3 cut(s) 382, 586, 939
HpySE526I ACGT 1 cut(s) 930
Hsp92II CATG 3 cut(s) 439, 744, 961
HspAI GCGC 3 cut(s) 114, 325, 583
Kzo9I GATC 6 cut(s) 150, 373, 775, 789, 919, 943
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 126, 484, 736
Lsp1109I GCAGC 4 cut(s) 174, 198, 700, 898
LweI GCATC 2 cut(s) 485, 522
MaeI CTAG 2 cut(s) 68, 117
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 2 cut(s) 407, 640
MalI GATC 6 cut(s) 152, 375, 777, 791, 921, 945
MboI GATC 6 cut(s) 150, 373, 775, 789, 919, 943
MboII GAAGA 8 cut(s) 236, 432, 560, 815, 823, 857, 889, 938
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 3 cut(s) 286, 619, 660
MluCI AATT 3 cut(s) 96, 632, 663
MmeI TCCRAC 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 461, 573
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 2 cut(s) 566, 713
MspI CCGG 1 cut(s) 787
Mva1269I GAATGC 1 cut(s) 607
MwoI GCNNNNNNNGC 2 cut(s) 893, 960
NcoI CCATGG 1 cut(s) 740
NdeII GATC 6 cut(s) 150, 373, 775, 789, 919, 943
NlaIII CATG 3 cut(s) 439, 744, 961
NlaIV GGNNCC 2 cut(s) 738, 749
NmuCI GTSAC 2 cut(s) 407, 640
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 5 cut(s) 31, 189, 213, 715, 913
PspFI CCCAGC 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 738, 749
PsuI RGATCY 1 cut(s) 943
PvuII CAGCTG 2 cut(s) 566, 713
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 461, 573
SatI GCNGC 5 cut(s) 30, 188, 212, 714, 912
Sau3AI GATC 6 cut(s) 150, 373, 775, 789, 919, 943
SduI GDGCHC 3 cut(s) 286, 619, 660
SfaNI GCATC 2 cut(s) 485, 522
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 3 cut(s) 96, 632, 663
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 68, 117
StyI CCWWGG 2 cut(s) 67, 740
TaaI ACNGT 5 cut(s) 57, 236, 268, 407, 418
TaiI ACGT 1 cut(s) 933
TaqI TCGA 3 cut(s) 425, 479, 832
TasI AATT 3 cut(s) 96, 632, 663
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 2 cut(s) 461, 573
Tru9I TTAA 2 cut(s) 461, 573
TscAI CASTG 2 cut(s) 412, 561
TseFI GTSAC 2 cut(s) 407, 640
TseI GCWGC 4 cut(s) 187, 211, 713, 911
Tsp45I GTSAC 2 cut(s) 407, 640
TspDTI ATGAA 3 cut(s) 108, 173, 614
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 412, 561
XapI RAATTY 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 68, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.