pycom15g12570

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0028736
Physical Location & Seq
Reverse (-)
8579935 .. 8581473
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12570.1

Sequence Viewer

Length: 864 bp
ATGTGGCATTGTGCCCTTCTGATCGATCTCAAATCACTTCTCCCTTCGAACAATATTGAAGATGCGTCCAAGAACCCTGAGCTGCTGAAAAAGATTGTTGAGGTGCTGCAAGACGGTGAAGATTTTGATTGTCCTATTTGCATTTCTCCGCCGACAGATATTGTTATTACTTGTTGTGCTCACATTTTTTGCCAAGCTTTTATTCTGAAAACCCTTCAGCGCACAAAGCCCTGCTGTCCCCTTTGCCGCCATGCTTTATCACATTCCGATCTGTTCTCAGCCCCTCAAACAGCTTTGGACAGCGACAACACAGCATCCTCGAAAACAACGGTGTCTTCAAAAGTAAATGCTCTCTTAAAACTTCTTGTTGCATCGAGGGAGCAAAACCCACTTACGAAATCAGTAGTGTTTTCCCAGTTCCGAAAGATGCTGATATATCTTGAAGAGCCACTCAAATCAGCTGGTTTTAAGACTTTGCGGTTAGATGGGTCCATGAATGCAAAGAAAAGGGCACAAGTAATCAAAGAATTTGGGATGACGGGACAAGATGCGCCCACTATTTTGCTTGCAAGTCTCAAGGCTTCAGGAACAGGTATAAACCTTACAGCTGCAAGTAGAGTGTATTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAGGCTATGGATCGCGTTCACCGGATTGGGCAGAAGGAAGATGTGAAGATTGTGAGGATTGTTGCTCGAGACAGCATTGAAGAGAGGATACTAGAGTTGCAAGACAAAAAGAAGAAACTTGCAAAGGAAGCTTTCCGGGGGAAGGCTGCAAAGGATCGGAGGGACGTAGGGGCCGAGGATCTTCTTGTCCTCATGGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

288

Amino Acids

31.92

Weight (kDa)

8.78

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 114 - 230 4e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028736)

Species Orthologous Gene IDs
malus_domestica MD00G1160000.v1.1
pyrus_communis pycom15g12570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 675
AciI CCGC 3 cut(s) 149, 247, 478
AclWI GGATC 3 cut(s) 678, 822, 846
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 200, 567
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 4 cut(s) 59, 339, 443, 740
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 6 cut(s) 82, 197, 293, 461, 608, 791
AluI AGCT 6 cut(s) 82, 197, 293, 461, 608, 791
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 578, 723
AlwI GGATC 3 cut(s) 678, 822, 846
Ama87I CYCGRG 1 cut(s) 726
AoxI GGCC 1 cut(s) 831
ApeKI GCWGC 4 cut(s) 82, 106, 608, 806
ApoI RAATTY 1 cut(s) 527
AspLEI GCGC 2 cut(s) 222, 553
AspS9I GGNCC 2 cut(s) 489, 831
AsuC2I CCSGG 1 cut(s) 797
AsuHPI GGTGA 2 cut(s) 128, 671
AsuII TTCGAA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 1 cut(s) 489
BaeGI GKGCMC 2 cut(s) 16, 514
BaeI ACNNNNGTAYC 2 cut(s) 740, 773
BarI GAAGNNNNNNTAC 2 cut(s) 732, 764
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 4 cut(s) 69, 93, 595, 793
BccI CCATC 1 cut(s) 479
BciVI GTATCC 1 cut(s) 741
BcnI CCSGG 1 cut(s) 797
BcoDI GTCTC 2 cut(s) 578, 723
BfaI CTAG 1 cut(s) 752
BfuI GTATCC 1 cut(s) 741
BisI GCNGC 5 cut(s) 83, 107, 247, 609, 807
BlsI GCNGC 5 cut(s) 84, 108, 248, 610, 808
Bme1390I CCNGG 1 cut(s) 797
Bme18I GGWCC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 2 cut(s) 489, 831
BmiI GGNNCC 4 cut(s) 490, 633, 644, 832
BmrFI CCNGG 1 cut(s) 797
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 5 cut(s) 52, 323, 380, 417, 538
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 797
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 635, 796, 834
BsaWI WCCGGW 1 cut(s) 681
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse1I ACTGG 1 cut(s) 415
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 635, 796, 834
BseGI GGATG 2 cut(s) 314, 540
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMII CTCAG 2 cut(s) 69, 291
BseNI ACTGG 1 cut(s) 415
BseSI GKGCMC 2 cut(s) 16, 514
BseXI GCAGC 4 cut(s) 69, 93, 595, 793
BseYI CCCAGC 1 cut(s) 646
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 1 cut(s) 833
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 2 cut(s) 682, 796
BslFI GGGAC 3 cut(s) 222, 555, 836
BslI CCNNNNNNNGG 1 cut(s) 802
BsmAI GTCTC 2 cut(s) 578, 723
BsmFI GGGAC 3 cut(s) 222, 555, 836
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 1 cut(s) 833
BsoBI CYCGRG 1 cut(s) 726
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 16, 181, 514
Bsp143I GATC 6 cut(s) 21, 25, 268, 670, 814, 838
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 3 cut(s) 149, 247, 478
BspANI GGCC 1 cut(s) 833
BspCNI CTCAG 2 cut(s) 70, 290
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 4 cut(s) 490, 633, 644, 832
BspPI GGATC 3 cut(s) 678, 822, 846
BspQI GCTCTTC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 47
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 635, 796, 834
BssMI GATC 6 cut(s) 21, 25, 268, 670, 814, 838
BssT1I CCWWGG 1 cut(s) 635
Bst4CI ACNGT 2 cut(s) 116, 331
Bst6I CTCTTC 2 cut(s) 438, 735
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 78, 277
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 2 cut(s) 314, 540
BstFNI CGCG 1 cut(s) 675
BstHHI GCGC 2 cut(s) 222, 553
BstKTI GATC 6 cut(s) 24, 28, 271, 673, 817, 841
BstMAI GTCTC 2 cut(s) 578, 723
BstMBI GATC 6 cut(s) 21, 25, 268, 670, 814, 838
BstMWI GCNNNNNNNGC 2 cut(s) 226, 788
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 1 cut(s) 795
BstSLI GKGCMC 2 cut(s) 16, 514
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 4 cut(s) 69, 93, 595, 793
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
Bsu15I ATCGAT 1 cut(s) 24
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 1 cut(s) 833
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 2 cut(s) 314, 540
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 2 cut(s) 222, 553
Cfr13I GGNCC 2 cut(s) 489, 831
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 54
CviAII CATG 5 cut(s) 251, 493, 636, 853, 859
DdeI CTNAG 2 cut(s) 78, 277
DpnI GATC 6 cut(s) 23, 27, 270, 672, 816, 840
DpnII GATC 6 cut(s) 21, 25, 268, 670, 814, 838
Eam1104I CTCTTC 2 cut(s) 438, 735
EarI CTCTTC 2 cut(s) 438, 735
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 2 cut(s) 200, 567
Eco88I CYCGRG 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 5 cut(s) 254, 496, 639, 856, 862
FaiI YATR 8 cut(s) 252, 436, 494, 596, 637, 668, 854, 860
FaqI GGGAC 3 cut(s) 222, 555, 836
FatI CATG 5 cut(s) 250, 492, 635, 852, 858
Fnu4HI GCNGC 5 cut(s) 83, 107, 247, 609, 807
FokI GGATG 2 cut(s) 301, 547
Fsp4HI GCNGC 5 cut(s) 83, 107, 247, 609, 807
FspBI CTAG 1 cut(s) 752
GlaI GCGC 2 cut(s) 221, 552
GluI GCNGC 5 cut(s) 83, 107, 247, 609, 807
GsaI CCCAGC 1 cut(s) 650
HaeIII GGCC 1 cut(s) 833
HapII CCGG 2 cut(s) 682, 796
HgaI GACGC 1 cut(s) 54
HhaI GCGC 2 cut(s) 222, 553
Hin1II CATG 5 cut(s) 254, 496, 639, 856, 862
Hin6I GCGC 2 cut(s) 220, 551
HinP1I GCGC 2 cut(s) 220, 551
HindIII AAGCTT 2 cut(s) 195, 789
HpaII CCGG 2 cut(s) 682, 796
HphI GGTGA 2 cut(s) 128, 671
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 5 cut(s) 21, 207, 268, 422, 819
Hpy188III TCNNGA 3 cut(s) 440, 585, 728
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 5 cut(s) 26, 54, 224, 688, 796
HpyCH4III ACNGT 2 cut(s) 116, 331
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 9 cut(s) 109, 141, 371, 500, 569, 611, 760, 782, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 788
HpyF3I CTNAG 2 cut(s) 78, 277
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 5 cut(s) 254, 496, 639, 856, 862
HspAI GCGC 2 cut(s) 220, 551
Kzo9I GATC 6 cut(s) 21, 25, 268, 670, 814, 838
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 2 cut(s) 379, 631
Lsp1109I GCAGC 4 cut(s) 69, 93, 595, 793
LweI GCATC 5 cut(s) 52, 323, 380, 417, 538
MaeI CTAG 1 cut(s) 752
MaeII ACGT 1 cut(s) 825
MalI GATC 6 cut(s) 23, 27, 270, 672, 816, 840
MboI GATC 6 cut(s) 21, 25, 268, 670, 814, 838
MboII GAAGA 9 cut(s) 71, 131, 327, 455, 710, 718, 752, 784, 833
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 3 cut(s) 16, 181, 514
MluCI AATT 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 609
MseI TTAA 2 cut(s) 356, 468
MslI CAYNNNNRTG 1 cut(s) 857
MspA1I CMGCKG 2 cut(s) 461, 608
MspI CCGG 2 cut(s) 682, 796
MspR9I CCNGG 1 cut(s) 797
Mva1269I GAATGC 1 cut(s) 502
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 226, 788
NciI CCSGG 1 cut(s) 797
NcoI CCATGG 1 cut(s) 635
NdeII GATC 6 cut(s) 21, 25, 268, 670, 814, 838
NlaIII CATG 5 cut(s) 254, 496, 639, 856, 862
NlaIV GGNNCC 4 cut(s) 490, 633, 644, 832
NmeAIII GCCGAG 1 cut(s) 859
NspI RCATGY 1 cut(s) 862
NspV TTCGAA 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 831
PctI GAATGC 1 cut(s) 502
PkrI GCNGC 5 cut(s) 84, 108, 248, 610, 808
PspFI CCCAGC 1 cut(s) 646
PspN4I GGNNCC 4 cut(s) 490, 633, 644, 832
PspPI GGNCC 2 cut(s) 489, 831
PsuI RGATCY 1 cut(s) 838
PvuII CAGCTG 2 cut(s) 461, 608
RseI CAYNNNNRTG 1 cut(s) 857
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 356, 468
SatI GCNGC 5 cut(s) 83, 107, 247, 609, 807
Sau3AI GATC 6 cut(s) 21, 25, 268, 670, 814, 838
Sau96I GGNCC 2 cut(s) 489, 831
ScrFI CCNGG 1 cut(s) 797
SduI GDGCHC 3 cut(s) 16, 181, 514
SfaNI GCATC 5 cut(s) 52, 323, 380, 417, 538
Sfr274I CTCGAG 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 2 cut(s) 575, 726
SmoI CTYRAG 2 cut(s) 575, 726
Sse9I AATT 1 cut(s) 527
SsiI CCGC 3 cut(s) 149, 247, 478
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 752
StyD4I CCNGG 1 cut(s) 795
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 2 cut(s) 116, 331
TaiI ACGT 1 cut(s) 828
TaqI TCGA 5 cut(s) 24, 47, 320, 374, 727
TasI AATT 1 cut(s) 527
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 356, 468
Tru9I TTAA 2 cut(s) 356, 468
TseI GCWGC 4 cut(s) 82, 106, 608, 806
TspDTI ATGAA 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 726
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.