MD00G1175500.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0028742
Physical Location & Seq
Reverse (-)
40671203 .. 40674296
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1175500.v1.1.491

Sequence Viewer

Length: 930 bp
ATGGCGAGGAAGAATTGTGGGGTTTTGATACGAGAGACGATGATCGGGATTGGGATTGGCAATCGCTATAACCCCCGAATCCCACTCCCAGGTCGTCTTCTTCATCATCACCGTACGGTCCAAACCCTAGCCCCCCCAAATTCAATGCCAACAACCGCGGCAGCAGCATCTGCCATTCCTTCCTCCAACGCATCCGCGTCCTCCTTGGCCTCACTCCCAGCCAGGGTCTCCGCCTCCGGTGCACTCTCGGCCTCGGCCTTAGGCCCAGGCTCAAAAGTTCTGTTTCCGAGTCCCCAAGACATGATCATGTTGACGGAAAAGAAGGAATATAAGAGAGCAATTAAAGAAGTTAAGGGTAAACAACTGCAGATTACTACCTATAACTATAAAGGTTATGCTTACTGCTTACTGTTGAGCGACTTGCACCCAATAGCACTTGATTTGGGTGTTTCCGTTATGCCAACATTCCTTTTCTATCAAAACGGGGTTAAGGTTGATGAGGTTGTTGGTGGTTATGCTGATTCCGTGATGGATATGTGTGAAAAACTTTACAGATACGTCAGGCCAGTCGAAACCCCTCAGCGGACGAGGTCATCCTGGAAGGGGAAAACGGATACTCAACAACTTGTCCTACAAGCTAAGAAATATGAGAATGACGTAGTAGTTGCAGGAGGGTGGAAAGTGGGAGATGGTTCGATGTTCTTCCAATGGAAAGGTGGTGCGGTAGATGTTGATAGTAGTGACGTACCTTCAGTTAGTGAAGTGATGAAGGATGTTGAATCTTTATGTACGGCACCAAAGGGTTTCAGTATGTGGTGTTTTGCGAAAGGATTATTTACAGCTAAGCCTGAGAAGAGAGTGATATTTTCAAACATTAAAGATCCTGGGCTCAAGATTGGTTGGTTTCGTGAAGAAATGGAGGTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

310

Amino Acids

33.87

Weight (kDa)

9.21

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028742)

Species Orthologous Gene IDs
malus_domestica MD00G1175500.v1.1
pyrus_communis pycom04g20200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 793
AccII CGCG 2 cut(s) 158, 197
AciI CCGC 6 cut(s) 156, 158, 195, 231, 583, 722
AclWI GGATC 1 cut(s) 875
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 735
AfaI GTAC 3 cut(s) 115, 747, 790
AfiI CCNNNNNNNGG 4 cut(s) 89, 223, 582, 603
AgsI TTSAA 3 cut(s) 144, 779, 870
AjnI CCWGG 5 cut(s) 88, 221, 265, 596, 883
AluBI AGCT 2 cut(s) 638, 842
AluI AGCT 2 cut(s) 638, 842
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 29, 232
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 1 cut(s) 875
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 5 cut(s) 207, 249, 255, 262, 563
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 161, 164
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 118, 263
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 173, 176
BccI CCATC 2 cut(s) 523, 683
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 5 cut(s) 90, 223, 267, 598, 885
BciVI GTATCC 1 cut(s) 607
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 29, 232
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 365
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 3 cut(s) 159, 162, 165
BlpI GCTNAGC 1 cut(s) 843
BlsI GCNGC 3 cut(s) 160, 163, 166
Bme1390I CCNGG 5 cut(s) 90, 223, 267, 598, 885
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 118, 263
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 5 cut(s) 90, 223, 267, 598, 885
BmsI GCATC 2 cut(s) 176, 200
BpiI GAAGAC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 579
Bpu1102I GCTNAGC 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 7 cut(s) 88, 156, 204, 222, 252, 265, 884
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 223, 582, 603
Bse1I ACTGG 1 cut(s) 566
Bse21I CCTNAGG 1 cut(s) 259
BseBI CCWGG 5 cut(s) 90, 223, 267, 598, 885
BseDI CCNNGG 7 cut(s) 88, 156, 204, 222, 252, 265, 884
BseGI GGATG 3 cut(s) 191, 593, 778
BseLI CCNNNNNNNGG 4 cut(s) 89, 223, 582, 603
BseMII CTCAG 2 cut(s) 593, 840
BseNI ACTGG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 173, 176
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 158, 197
BshFI GGCC 5 cut(s) 209, 251, 257, 264, 565
BshNI GGYRCC 1 cut(s) 793
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 237
BsiWI CGTACG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 4 cut(s) 89, 223, 582, 603
BsmAI GTCTC 2 cut(s) 29, 232
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 5 cut(s) 209, 251, 257, 264, 565
Bso31I GGTCTC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 244, 891
Bsp143I GATC 3 cut(s) 42, 303, 880
Bsp1720I GCTNAGC 1 cut(s) 843
BspACI CCGC 6 cut(s) 156, 158, 195, 231, 583, 722
BspANI GGCC 5 cut(s) 209, 251, 257, 264, 565
BspCNI CTCAG 2 cut(s) 592, 841
BspFNI CGCG 2 cut(s) 158, 197
BspLI GGNNCC 1 cut(s) 795
BspMAI CTGCAG 1 cut(s) 369
BspPI GGATC 1 cut(s) 875
BspT107I GGYRCC 1 cut(s) 793
BspTNI GGTCTC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 7 cut(s) 88, 156, 204, 222, 252, 265, 884
BssMI GATC 3 cut(s) 42, 303, 880
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 5 cut(s) 90, 223, 267, 598, 885
Bst4CI ACNGT 3 cut(s) 113, 118, 411
Bst6I CTCTTC 1 cut(s) 848
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 5 cut(s) 259, 579, 639, 843, 849
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 191, 593, 778
BstFNI CGCG 2 cut(s) 158, 197
BstKTI GATC 3 cut(s) 45, 306, 883
BstMAI GTCTC 2 cut(s) 29, 232
BstMBI GATC 3 cut(s) 42, 303, 880
BstMWI GCNNNNNNNGC 4 cut(s) 164, 170, 239, 248
BstNI CCWGG 5 cut(s) 90, 223, 267, 598, 885
BstSCI CCNGG 5 cut(s) 88, 221, 265, 596, 883
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 2 cut(s) 158, 197
BstV1I GCAGC 2 cut(s) 173, 176
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
Bsu36I CCTNAGG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 5 cut(s) 209, 251, 257, 264, 565
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 191, 593, 778
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 118, 263
Cfr42I CCGCGG 1 cut(s) 159
CseI GACGC 1 cut(s) 186
Csp6I GTAC 3 cut(s) 114, 746, 789
CviAII CATG 2 cut(s) 301, 307
CviQI GTAC 3 cut(s) 114, 746, 789
DdeI CTNAG 5 cut(s) 259, 579, 639, 843, 849
DpnI GATC 3 cut(s) 44, 305, 882
DpnII GATC 3 cut(s) 42, 303, 880
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
EciI GGCGGA 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 891
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 735
Eco81I CCTNAGG 1 cut(s) 259
EcoRII CCWGG 5 cut(s) 88, 221, 265, 596, 883
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 891
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 2 cut(s) 304, 310
FaqI GGGAC 1 cut(s) 276
FatI CATG 2 cut(s) 300, 306
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 159, 162, 165
FokI GGATG 3 cut(s) 178, 580, 785
FriOI GRGCYC 1 cut(s) 891
Fsp4HI GCNGC 3 cut(s) 159, 162, 165
FspBI CTAG 1 cut(s) 128
GluI GCNGC 3 cut(s) 159, 162, 165
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 5 cut(s) 209, 251, 257, 264, 565
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 304, 310
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 4 cut(s) 78, 289, 521, 779
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 3 cut(s) 242, 312, 359
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 46, 892, 908
Hpy8I GTNNAC 3 cut(s) 242, 312, 359
HpyAV CCTTC 5 cut(s) 189, 316, 595, 759, 763
HpyCH4III ACNGT 3 cut(s) 113, 118, 411
HpyCH4IV ACGT 3 cut(s) 558, 657, 744
HpyCH4V TGCA 4 cut(s) 242, 367, 424, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 170, 239, 248
HpyF3I CTNAG 5 cut(s) 259, 579, 639, 843, 849
HpySE526I ACGT 3 cut(s) 558, 657, 744
Hsp92II CATG 2 cut(s) 304, 310
Ksp22I TGATCA 1 cut(s) 303
KspI CCGCGG 1 cut(s) 159
Kzo9I GATC 3 cut(s) 42, 303, 880
Lsp1109I GCAGC 2 cut(s) 173, 176
LweI GCATC 2 cut(s) 176, 200
MaeI CTAG 1 cut(s) 128
MaeII ACGT 3 cut(s) 558, 657, 744
MaeIII GTNAC 1 cut(s) 740
MalI GATC 3 cut(s) 44, 305, 882
MboI GATC 3 cut(s) 42, 303, 880
MboII GAAGA 6 cut(s) 22, 89, 92, 694, 865, 923
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 2 cut(s) 244, 891
MluCI AATT 3 cut(s) 13, 139, 339
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 210
MseI TTAA 4 cut(s) 342, 351, 489, 876
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 158, 583
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 5 cut(s) 90, 223, 267, 598, 885
MvaI CCWGG 5 cut(s) 90, 223, 267, 598, 885
MvnI CGCG 2 cut(s) 158, 197
MwoI GCNNNNNNNGC 4 cut(s) 164, 170, 239, 248
NdeII GATC 3 cut(s) 42, 303, 880
NlaIII CATG 2 cut(s) 304, 310
NlaIV GGNNCC 1 cut(s) 795
NmeAIII GCCGAG 2 cut(s) 227, 233
NmuCI GTSAC 1 cut(s) 740
PfeI GAWTC 3 cut(s) 78, 521, 779
Pfl23II CGTACG 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 596
PkrI GCNGC 3 cut(s) 160, 163, 166
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp6I CCWGG 5 cut(s) 88, 221, 265, 596, 883
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 5 cut(s) 88, 221, 265, 596, 883
PspLI CGTACG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 795
PspPI GGNCC 2 cut(s) 118, 263
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 589
RsaI GTAC 3 cut(s) 115, 747, 790
RsaNI GTAC 3 cut(s) 114, 746, 789
RseI CAYNNNNRTG 1 cut(s) 305
SacII CCGCGG 1 cut(s) 159
SaqAI TTAA 4 cut(s) 342, 351, 489, 876
SatI GCNGC 3 cut(s) 159, 162, 165
Sau3AI GATC 3 cut(s) 42, 303, 880
Sau96I GGNCC 2 cut(s) 118, 263
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 5 cut(s) 90, 223, 267, 598, 885
SduI GDGCHC 2 cut(s) 244, 891
SfaNI GCATC 2 cut(s) 176, 200
SfcI CTRYAG 1 cut(s) 365
Sfr303I CCGCGG 1 cut(s) 159
SgrBI CCGCGG 1 cut(s) 159
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 3 cut(s) 13, 139, 339
SsiI CCGC 6 cut(s) 156, 158, 195, 231, 583, 722
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 5 cut(s) 88, 221, 265, 596, 883
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 113, 118, 411
TaiI ACGT 3 cut(s) 561, 660, 747
TaqI TCGA 2 cut(s) 570, 695
TasI AATT 3 cut(s) 13, 139, 339
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 3 cut(s) 78, 521, 779
Tru1I TTAA 4 cut(s) 342, 351, 489, 876
Tru9I TTAA 4 cut(s) 342, 351, 489, 876
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 2 cut(s) 161, 164
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 2 cut(s) 92, 782
TspGWI ACGGA 4 cut(s) 329, 442, 514, 626
Tth111I GACNNNGTC 1 cut(s) 589
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.