Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0021192

Physical Location & Seq

Genomic Coordinates Forward (+)

43290242 .. 43290754

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1183100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTGTCCACAAGAGGACTTGCTTACCTCCATAAGGAGTCAAGGCCAAGGATTGTACATCGAGATGTCAAAGCCATTAATATTTTGCTCGATGTAGAACTCCCCCCAAAAATATCAAATTTTGGATTGGAAAAGTTTTATGATGACGAGAAAACCCACATCAGCACCCGAGTTGCAGGGACAATAGGCTATTTGGCACCCGAGTATGCAATGCGTGGACATTTGACAGATAAGGCTGATGTGTTTGGTTTTGGAGTCGTTGCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

90

Amino Acids

9.98

Weight (kDa)

8.06

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 88	1.3e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 87	5.5e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021192)

Species	Orthologous Gene IDs
malus_domestica	MD00G1183100.v1.1
rosa_multiflora	Rmu_co8338403.1_g000001 Rmu_sc0000247.1_g000033
rosa_roxburghii	Rroxscaffold_2G00089250
rosa_rugosa	Rorug01G0451700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	34
Ama87I	CYCGRG	2 cut(s)	168, 200
AoxI	GGCC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	78
AvaI	CYCGRG	2 cut(s)	168, 200
BanI	GGYRCC	1 cut(s)	196
BmeT110I	CYCGRG	2 cut(s)	168, 200
BmiI	GGNNCC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	196
BsiHKCI	CYCGRG	2 cut(s)	168, 200
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	46
BsoBI	CYCGRG	2 cut(s)	168, 200
Bsp1407I	TGTACA	1 cut(s)	55
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	56
CviJI	RGCY	4 cut(s)	46, 74, 189, 236
CviKI_1	RGCY	4 cut(s)	46, 74, 189, 236
CviQI	GTAC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	47
Eco88I	CYCGRG	2 cut(s)	168, 200
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaiI	YATR	3 cut(s)	33, 141, 207
FaqI	GGGAC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	38, 255
Hpy166II	GTNNAC	2 cut(s)	9, 218
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	2 cut(s)	9, 218
HpyCH4V	TGCA	2 cut(s)	176, 209
LpnPI	CCDG	1 cut(s)	162
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	47, 264
MnlI	CCTC	2 cut(s)	8, 38
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	198
PleI	GAGTC	2 cut(s)	46, 263
PpsI	GAGTC	2 cut(s)	46, 263
PshBI	ATTAAT	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	198
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	78
SchI	GAGTC	2 cut(s)	47, 264
SetI	ASST	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	118
SspI	AATATT	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	47
TaqI	TCGA	2 cut(s)	61, 90
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
VspI	ATTAAT	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.