Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0021192

Physical Location & Seq

Genomic Coordinates Reverse (-)

11255392 .. 11273756

Gene Structure 18365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAGTTTCCTCGGTGGAGAGGATGCAAGGTTCGAAACCTTGACCTGCTGCACGAAAACTCGCCCTTAACCACCGGAGCACAAGCTAAAAGGAGTCGAGAGAAGGCAAGAGGACTTGCTTATCTTCATGAGGAGTCAAGCCCAAGGACTGTGCATAGAGATGTCAATGCCATTAATATTTTACTCGATGCAAAACTCTGCCTAAAAATATTAGATTTTGGATTAGTAAATGAGCTCTATGATGATGACAAAACCCATACCAGTACCCAAGTTGCAGGGACAATTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAAAGATCAGTAGTGATTTCCTTCAATGTGCTATGGATTCATTTGAGCCCTATGGAAATGGGACAAATGAATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGATGCAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

5.88

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 96	2.4e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 90	8.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021192)

Species	Orthologous Gene IDs
malus_domestica	MD00G1183100.v1.1
rosa_multiflora	Rmu_co8338403.1_g000001 Rmu_sc0000247.1_g000033
rosa_roxburghii	Rroxscaffold_2G00089250
rosa_rugosa	Rorug01G0451700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	335, 404, 449
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	3 cut(s)	86, 235, 400
AluI	AGCT	3 cut(s)	86, 235, 400
Alw21I	GWGCWC	2 cut(s)	82, 237
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	3 cut(s)	49, 313, 341
AseI	ATTAAT	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	237, 474
Bbv12I	GWGCWC	2 cut(s)	82, 237
BbvI	GCAGC	3 cut(s)	36, 325, 353
BccI	CCATC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	3 cut(s)	50, 314, 342
BlsI	GCNGC	3 cut(s)	51, 315, 343
Bme1390I	CCNGG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	4 cut(s)	14, 178, 328, 520
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	11, 143
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	11, 143
BseGI	GGATG	2 cut(s)	29, 305
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	36, 325, 353
BsgI	GTGCAG	2 cut(s)	35, 332
BsiHKAI	GWGCWC	2 cut(s)	82, 237
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	292, 499
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	292, 499
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	82, 237, 474
Bsp143I	GATC	2 cut(s)	322, 429
BspHI	TCATGA	2 cut(s)	127, 319
BspMI	ACCTGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	11, 143
BssMI	GATC	2 cut(s)	322, 429
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	29, 305
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	2 cut(s)	325, 432
BstMBI	GATC	2 cut(s)	322, 429
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 350
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	36, 325, 353
BtsCI	GGATG	2 cut(s)	29, 305
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	2 cut(s)	127, 319
CfoI	GCGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	5 cut(s)	128, 290, 320, 350, 416
CviJI	RGCY	8 cut(s)	86, 141, 235, 316, 344, 363, 400, 472
CviKI_1	RGCY	8 cut(s)	86, 141, 235, 316, 344, 363, 400, 472
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	324, 431
DpnII	GATC	2 cut(s)	322, 429
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	2 cut(s)	237, 474
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	2 cut(s)	237, 474
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	5 cut(s)	131, 293, 323, 353, 419
FaqI	GGGAC	2 cut(s)	292, 499
FatI	CATG	5 cut(s)	127, 289, 319, 349, 415
Fnu4HI	GCNGC	3 cut(s)	50, 314, 342
FokI	GGATG	2 cut(s)	36, 312
FriOI	GRGCYC	2 cut(s)	237, 474
Fsp4HI	GCNGC	3 cut(s)	50, 314, 342
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	3 cut(s)	50, 314, 342
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	5 cut(s)	131, 293, 323, 353, 419
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HinfI	GANTC	4 cut(s)	94, 134, 461, 494
HpaII	CCGG	1 cut(s)	75
Hpy188III	TCNNGA	5 cut(s)	98, 128, 320, 335, 404
HpyAV	CCTTC	3 cut(s)	97, 374, 455
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	8 cut(s)	27, 52, 154, 191, 275, 313, 341, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 350
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	131, 293, 323, 353, 419
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	322, 429
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	77, 298
LpnPI	CCDG	6 cut(s)	59, 88, 261, 274, 282, 309
Lsp1109I	GCAGC	3 cut(s)	36, 325, 353
LweI	GCATC	4 cut(s)	14, 178, 328, 520
MalI	GATC	2 cut(s)	324, 431
MboI	GATC	2 cut(s)	322, 429
MboII	GAAGA	2 cut(s)	116, 370
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	3 cut(s)	82, 237, 474
MluCI	AATT	2 cut(s)	282, 379
MlyI	GAGTC	2 cut(s)	103, 143
MnlI	CCTC	6 cut(s)	14, 21, 104, 124, 327, 336
MseI	TTAA	2 cut(s)	68, 174
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	310, 350
NdeII	GATC	2 cut(s)	322, 429
NlaIII	CATG	5 cut(s)	131, 293, 323, 353, 419
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	34
PaeI	GCATGC	1 cut(s)	293
PagI	TCATGA	2 cut(s)	127, 319
PciSI	GCTCTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	461, 494
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	51, 315, 343
PleI	GAGTC	2 cut(s)	102, 142
PpsI	GAGTC	2 cut(s)	102, 142
PshBI	ATTAAT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	68, 174
SatI	GCNGC	3 cut(s)	50, 314, 342
Sau3AI	GATC	2 cut(s)	322, 429
SchI	GAGTC	2 cut(s)	103, 143
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	3 cut(s)	82, 237, 474
SetI	ASST	6 cut(s)	33, 42, 48, 88, 237, 402
SfaNI	GCATC	4 cut(s)	14, 178, 328, 520
SfuI	TTCGAA	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	282, 379
SspI	AATATT	2 cut(s)	178, 210
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	34, 97, 186
TasI	AATT	2 cut(s)	282, 379
TfiI	GAWTC	2 cut(s)	461, 494
Tru1I	TTAA	2 cut(s)	68, 174
Tru9I	TTAA	2 cut(s)	68, 174
TseI	GCWGC	3 cut(s)	49, 313, 341
TspDTI	ATGAA	5 cut(s)	17, 116, 372, 453, 507
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.