MD00G1190000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
45654150 .. 45663384
9235 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1190000.v1.1.491

Sequence Viewer

Length: 150 bp
ATGAAAGATGAGCAGCTTGTGGATGGGTGGCTACATCGAATCCCTAAGAGGAGATTAGTTACATTTCATGTTTACAAACGTTTTAACATAGAAATACATAACATGAATGAACATAGAATTGAGAAGAAGGAACCCTTGAAGCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

6.17

Weight (kDa)

9.87

Isoelectric Point (pI)

83.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020393)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 17
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 132
BseGI GGATG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 28
CviAII CATG 2 cut(s) 68, 103
CviJI RGCY 2 cut(s) 16, 31
CviKI_1 RGCY 2 cut(s) 16, 31
DdeI CTNAG 1 cut(s) 45
FaeI CATG 2 cut(s) 71, 106
FaiI YATR 5 cut(s) 69, 89, 99, 104, 114
FalI AAGNNNNNCTT 1 cut(s) 119
FatI CATG 2 cut(s) 67, 102
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 14
FspEI CC 8 cut(s) 5, 9, 10, 13, 34, 56, 57, 113
GluI GCNGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 71, 106
HinfI GANTC 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 71, 106
Lsp1109I GCAGC 1 cut(s) 25
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 1 cut(s) 136
MluCI AATT 1 cut(s) 117
MnlI CCTC 1 cut(s) 42
MseI TTAA 1 cut(s) 84
NlaIII CATG 2 cut(s) 71, 106
NlaIV GGNNCC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 14
SetI ASST 2 cut(s) 18, 82
SgeI CNNG 3 cut(s) 29, 80, 115
Sse9I AATT 1 cut(s) 117
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 17, 56, 119, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.