transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1190000.v1.1 |
| pyrus_communis | pycom01g01650 pycom1341g00050 pycom13g26360 pycom13g26410 pycom13g26560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1611 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 428 |
| Acc36I | ACCTGC | 1 cut(s) | 433 |
| AccB1I | GGYRCC | 2 cut(s) | 1353, 2288 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1819, 2268 |
| AccBSI | CCGCTC | 2 cut(s) | 2203, 2218 |
| AciI | CCGC | 3 cut(s) | 1937, 2203, 2218 |
| AclI | AACGTT | 1 cut(s) | 1693 |
| AclWI | GGATC | 3 cut(s) | 549, 597, 610 |
| AcoI | YGGCCR | 1 cut(s) | 2259 |
| AcsI | RAATTY | 8 cut(s) | 68, 823, 916, 1538, 1840, 1873, 2121, 2330 |
| AcyI | GRCGYC | 1 cut(s) | 1354 |
| AfaI | GTAC | 2 cut(s) | 1078, 2422 |
| AfeI | AGCGCT | 1 cut(s) | 2267 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 270, 398, 1363, 1819, 2268 |
| AflIII | ACRYGT | 2 cut(s) | 285, 2097 |
| AjnI | CCWGG | 4 cut(s) | 1362, 2051, 2243, 2277 |
| AluBI | AGCT | 8 cut(s) | 47, 134, 796, 1961, 2166, 2233, 2354, 2363 |
| AluI | AGCT | 8 cut(s) | 47, 134, 796, 1961, 2166, 2233, 2354, 2363 |
| Alw21I | GWGCWC | 3 cut(s) | 136, 214, 798 |
| Alw26I | GTCTC | 1 cut(s) | 1316 |
| Alw44I | GTGCAC | 1 cut(s) | 210 |
| AlwI | GGATC | 3 cut(s) | 549, 597, 610 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 710, 1369 |
| Aor51HI | AGCGCT | 1 cut(s) | 2267 |
| AoxI | GGCC | 4 cut(s) | 1786, 1810, 2246, 2259 |
| ApaLI | GTGCAC | 1 cut(s) | 210 |
| ApeKI | GCWGC | 2 cut(s) | 2078, 2351 |
| ApoI | RAATTY | 8 cut(s) | 68, 823, 916, 1538, 1840, 1873, 2121, 2330 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 749 |
| AspLEI | GCGC | 2 cut(s) | 1356, 2268 |
| AspS9I | GGNCC | 2 cut(s) | 1301, 1810 |
| AsuHPI | GGTGA | 3 cut(s) | 53, 355, 1869 |
| AvaII | GGWCC | 1 cut(s) | 1301 |
| BaeGI | GKGCMC | 1 cut(s) | 214 |
| BalI | TGGCCA | 1 cut(s) | 2261 |
| BamHI | GGATCC | 1 cut(s) | 602 |
| BanI | GGYRCC | 2 cut(s) | 1353, 2288 |
| BanII | GRGCYC | 2 cut(s) | 136, 798 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2180, 2212 |
| Bbv12I | GWGCWC | 3 cut(s) | 136, 214, 798 |
| BbvI | GCAGC | 2 cut(s) | 2065, 2363 |
| BccI | CCATC | 8 cut(s) | 385, 470, 964, 1641, 1843, 1927, 2218, 2312 |
| BceAI | ACGGC | 1 cut(s) | 1341 |
| BciT130I | CCWGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| BclI | TGATCA | 1 cut(s) | 1129 |
| BcoDI | GTCTC | 1 cut(s) | 1316 |
| BfaI | CTAG | 1 cut(s) | 1881 |
| BfoI | RGCGCY | 2 cut(s) | 1357, 2269 |
| BfuAI | ACCTGC | 1 cut(s) | 433 |
| BisI | GCNGC | 2 cut(s) | 2079, 2352 |
| BlsI | GCNGC | 2 cut(s) | 2080, 2353 |
| Bme1390I | CCNGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| Bme18I | GGWCC | 1 cut(s) | 1301 |
| BmgT120I | GGNCC | 2 cut(s) | 1301, 1810 |
| BmiI | GGNNCC | 4 cut(s) | 604, 851, 1355, 2290 |
| BmrFI | CCNGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| BmsI | GCATC | 2 cut(s) | 328, 2234 |
| BpmI | CTGGAG | 2 cut(s) | 2074, 2316 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1429 |
| BpuEI | CTTGAG | 2 cut(s) | 1137, 1732 |
| BsaHI | GRCGYC | 1 cut(s) | 1354 |
| BsaJI | CCNNGG | 3 cut(s) | 1363, 1983, 2277 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 678, 708 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 270, 398, 1363, 1819, 2268 |
| BseBI | CCWGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| BseDI | CCNNGG | 3 cut(s) | 1363, 1983, 2277 |
| BseGI | GGATG | 6 cut(s) | 377, 1633, 1705, 1844, 2277, 2372 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 270, 398, 1363, 1819, 2268 |
| BseMII | CTCAG | 3 cut(s) | 542, 1893, 2354 |
| BseSI | GKGCMC | 1 cut(s) | 214 |
| BseXI | GCAGC | 2 cut(s) | 2065, 2363 |
| BshFI | GGCC | 4 cut(s) | 1788, 1812, 2248, 2261 |
| BshNI | GGYRCC | 2 cut(s) | 1353, 2288 |
| BsiHKAI | GWGCWC | 3 cut(s) | 136, 214, 798 |
| BsiSI | CCGG | 1 cut(s) | 2075 |
| BslFI | GGGAC | 2 cut(s) | 1364, 1380 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 270, 398, 1363, 1819, 2268 |
| BsmAI | GTCTC | 1 cut(s) | 1316 |
| BsmFI | GGGAC | 2 cut(s) | 1364, 1380 |
| BsmI | GAATGC | 4 cut(s) | 102, 180, 947, 2239 |
| BsnI | GGCC | 4 cut(s) | 1788, 1812, 2248, 2261 |
| Bsp1286I | GDGCHC | 3 cut(s) | 136, 214, 798 |
| Bsp1407I | TGTACA | 1 cut(s) | 1076 |
| Bsp143I | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| BspACI | CCGC | 3 cut(s) | 1937, 2203, 2218 |
| BspANI | GGCC | 4 cut(s) | 1788, 1812, 2248, 2261 |
| BspCNI | CTCAG | 3 cut(s) | 541, 1894, 2353 |
| BspLI | GGNNCC | 4 cut(s) | 604, 851, 1355, 2290 |
| BspMI | ACCTGC | 1 cut(s) | 433 |
| BspPI | GGATC | 3 cut(s) | 549, 597, 610 |
| BspT107I | GGYRCC | 2 cut(s) | 1353, 2288 |
| BsrBI | CCGCTC | 2 cut(s) | 2203, 2218 |
| BsrGI | TGTACA | 1 cut(s) | 1076 |
| BssECI | CCNNGG | 3 cut(s) | 1363, 1983, 2277 |
| BssMI | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| BssNI | GRCGYC | 1 cut(s) | 1354 |
| BssT1I | CCWWGG | 1 cut(s) | 1983 |
| Bst2UI | CCWGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| Bst4CI | ACNGT | 4 cut(s) | 712, 1803, 1856, 2327 |
| Bst6I | CTCTTC | 3 cut(s) | 820, 1857, 1923 |
| BstACI | GRCGYC | 1 cut(s) | 1354 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 280 |
| BstAUI | TGTACA | 1 cut(s) | 1076 |
| BstC8I | GCNNGC | 4 cut(s) | 1039, 1939, 2310, 2397 |
| BstDEI | CTNAG | 8 cut(s) | 512, 528, 992, 1270, 1429, 1511, 1902, 2340 |
| BstF5I | GGATG | 6 cut(s) | 377, 1633, 1705, 1844, 2277, 2372 |
| BstH2I | RGCGCY | 2 cut(s) | 1357, 2269 |
| BstHHI | GCGC | 2 cut(s) | 1356, 2268 |
| BstKTI | GATC | 4 cut(s) | 534, 544, 605, 1132 |
| BstMAI | GTCTC | 1 cut(s) | 1316 |
| BstMBI | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 140, 280, 2215, 2245, 2360 |
| BstNI | CCWGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| BstNSI | RCATGY | 9 cut(s) | 102, 112, 116, 180, 190, 194, 289, 2101, 2405 |
| BstSCI | CCNGG | 4 cut(s) | 1362, 2051, 2243, 2277 |
| BstSLI | GKGCMC | 1 cut(s) | 214 |
| BstV1I | GCAGC | 2 cut(s) | 2065, 2363 |
| BstX2I | RGATCY | 1 cut(s) | 602 |
| BstYI | RGATCY | 1 cut(s) | 602 |
| BsuRI | GGCC | 4 cut(s) | 1788, 1812, 2248, 2261 |
| BtsCI | GGATG | 6 cut(s) | 377, 1633, 1705, 1844, 2277, 2372 |
| BtsIMutI | CAGTG | 1 cut(s) | 2323 |
| BveI | ACCTGC | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 4 cut(s) | 1039, 1939, 2310, 2397 |
| CaiI | CAGNNNCTG | 2 cut(s) | 710, 1369 |
| CfoI | GCGC | 2 cut(s) | 1356, 2268 |
| Cfr13I | GGNCC | 2 cut(s) | 1301, 1810 |
| CseI | GACGC | 1 cut(s) | 2314 |
| Csp6I | GTAC | 2 cut(s) | 1077, 2421 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 249, 284, 1692, 1727 |
| CviQI | GTAC | 2 cut(s) | 1077, 2421 |
| DdeI | CTNAG | 8 cut(s) | 512, 528, 992, 1270, 1429, 1511, 1902, 2340 |
| DinI | GGCGCC | 1 cut(s) | 1355 |
| DpnI | GATC | 4 cut(s) | 533, 543, 604, 1131 |
| DpnII | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| DraI | TTTAAA | 1 cut(s) | 1732 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 428 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 428 |
| EaeI | YGGCCR | 1 cut(s) | 2259 |
| Eam1104I | CTCTTC | 3 cut(s) | 820, 1857, 1923 |
| EarI | CTCTTC | 3 cut(s) | 820, 1857, 1923 |
| Ecl136II | GAGCTC | 2 cut(s) | 134, 796 |
| Eco130I | CCWWGG | 1 cut(s) | 1983 |
| Eco147I | AGGCCT | 1 cut(s) | 2248 |
| Eco24I | GRGCYC | 2 cut(s) | 136, 798 |
| Eco47I | GGWCC | 1 cut(s) | 1301 |
| Eco47III | AGCGCT | 1 cut(s) | 2267 |
| Eco53kI | GAGCTC | 2 cut(s) | 134, 796 |
| EcoICRI | GAGCTC | 2 cut(s) | 134, 796 |
| EcoRI | GAATTC | 4 cut(s) | 68, 823, 1873, 2330 |
| EcoRII | CCWGG | 4 cut(s) | 1362, 2051, 2243, 2277 |
| EcoT14I | CCWWGG | 1 cut(s) | 1983 |
| EcoT22I | ATGCAT | 5 cut(s) | 104, 114, 182, 192, 1029 |
| EcoT38I | GRGCYC | 2 cut(s) | 136, 798 |
| EgeI | GGCGCC | 1 cut(s) | 1355 |
| EheI | GGCGCC | 1 cut(s) | 1355 |
| ErhI | CCWWGG | 1 cut(s) | 1983 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 799, 831, 837, 869, 1412, 1444, 1938, 1970 |
| FaqI | GGGAC | 2 cut(s) | 1364, 1380 |
| FauI | CCCGC | 2 cut(s) | 1930, 2211 |
| FbaI | TGATCA | 1 cut(s) | 1129 |
| Fnu4HI | GCNGC | 2 cut(s) | 2079, 2352 |
| FokI | GGATG | 6 cut(s) | 364, 1620, 1692, 1831, 2284, 2359 |
| FriOI | GRGCYC | 2 cut(s) | 136, 798 |
| Fsp4HI | GCNGC | 2 cut(s) | 2079, 2352 |
| FspBI | CTAG | 1 cut(s) | 1881 |
| GlaI | GCGC | 2 cut(s) | 1355, 2267 |
| GluI | GCNGC | 2 cut(s) | 2079, 2352 |
| GsuI | CTGGAG | 2 cut(s) | 2074, 2316 |
| HaeII | RGCGCY | 2 cut(s) | 1357, 2269 |
| HaeIII | GGCC | 4 cut(s) | 1788, 1812, 2248, 2261 |
| HapII | CCGG | 1 cut(s) | 2075 |
| HgaI | GACGC | 1 cut(s) | 2314 |
| HhaI | GCGC | 2 cut(s) | 1356, 2268 |
| Hin1I | GRCGYC | 1 cut(s) | 1354 |
| Hin6I | GCGC | 2 cut(s) | 1354, 2266 |
| HinP1I | GCGC | 2 cut(s) | 1354, 2266 |
| HindIII | AAGCTT | 1 cut(s) | 2361 |
| HpaII | CCGG | 1 cut(s) | 2075 |
| HphI | GGTGA | 3 cut(s) | 53, 355, 1869 |
| Hpy166II | GTNNAC | 7 cut(s) | 196, 212, 260, 910, 1165, 1454, 2044 |
| Hpy188III | TCNNGA | 4 cut(s) | 1091, 1154, 2041, 2295 |
| Hpy8I | GTNNAC | 7 cut(s) | 196, 212, 260, 910, 1165, 1454, 2044 |
| Hpy99I | CGWCG | 1 cut(s) | 2383 |
| HpyAV | CCTTC | 4 cut(s) | 801, 863, 1801, 1862 |
| HpyCH4III | ACNGT | 4 cut(s) | 712, 1803, 1856, 2327 |
| HpyCH4IV | ACGT | 2 cut(s) | 1693, 2086 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 140, 280, 2215, 2245, 2360 |
| HpyF3I | CTNAG | 8 cut(s) | 512, 528, 992, 1270, 1429, 1511, 1902, 2340 |
| HpySE526I | ACGT | 2 cut(s) | 1693, 2086 |
| Hsp92I | GRCGYC | 1 cut(s) | 1354 |
| HspAI | GCGC | 2 cut(s) | 1354, 2266 |
| KasI | GGCGCC | 1 cut(s) | 1353 |
| Ksp22I | TGATCA | 1 cut(s) | 1129 |
| Kzo9I | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| LmnI | GCTCC | 8 cut(s) | 139, 336, 635, 793, 801, 2163, 2215, 2230 |
| Lsp1109I | GCAGC | 2 cut(s) | 2065, 2363 |
| LweI | GCATC | 2 cut(s) | 328, 2234 |
| MaeI | CTAG | 1 cut(s) | 1881 |
| MaeII | ACGT | 2 cut(s) | 1693, 2086 |
| MaeIII | GTNAC | 4 cut(s) | 31, 1231, 1292, 2321 |
| MalI | GATC | 4 cut(s) | 533, 543, 604, 1131 |
| MbiI | CCGCTC | 2 cut(s) | 2203, 2218 |
| MboI | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| MboII | GAAGA | 6 cut(s) | 807, 1874, 1937, 1940, 1958, 2060 |
| MflI | RGATCY | 1 cut(s) | 602 |
| MhlI | GDGCHC | 3 cut(s) | 136, 214, 798 |
| MlsI | TGGCCA | 1 cut(s) | 2261 |
| MluNI | TGGCCA | 1 cut(s) | 2261 |
| Mly113I | GGCGCC | 1 cut(s) | 1354 |
| MlyI | GAGTC | 3 cut(s) | 482, 520, 1723 |
| MmeI | TCCRAC | 3 cut(s) | 173, 494, 823 |
| Mox20I | TGGCCA | 1 cut(s) | 2261 |
| Mph1103I | ATGCAT | 5 cut(s) | 104, 114, 182, 192, 1029 |
| MroXI | GAANNNNTTC | 1 cut(s) | 749 |
| MscI | TGGCCA | 1 cut(s) | 2261 |
| MslI | CAYNNNNRTG | 5 cut(s) | 107, 111, 185, 189, 223 |
| Msp20I | TGGCCA | 1 cut(s) | 2261 |
| MspI | CCGG | 1 cut(s) | 2075 |
| MspR9I | CCNGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| Mva1269I | GAATGC | 4 cut(s) | 102, 180, 947, 2239 |
| MvaI | CCWGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 140, 280, 2215, 2245, 2360 |
| NarI | GGCGCC | 1 cut(s) | 1354 |
| NdeII | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| NlaIV | GGNNCC | 4 cut(s) | 604, 851, 1355, 2290 |
| NmeAIII | GCCGAG | 1 cut(s) | 155 |
| NmuCI | GTSAC | 2 cut(s) | 31, 2321 |
| NsiI | ATGCAT | 5 cut(s) | 104, 114, 182, 192, 1029 |
| NspI | RCATGY | 9 cut(s) | 102, 112, 116, 180, 190, 194, 289, 2101, 2405 |
| PceI | AGGCCT | 1 cut(s) | 2248 |
| PciI | ACATGT | 2 cut(s) | 285, 2097 |
| PctI | GAATGC | 4 cut(s) | 102, 180, 947, 2239 |
| PdmI | GAANNNNTTC | 1 cut(s) | 749 |
| PflFI | GACNNNGTC | 1 cut(s) | 323 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1819, 2268 |
| PfoI | TCCNGGA | 1 cut(s) | 2051 |
| PkrI | GCNGC | 2 cut(s) | 2080, 2353 |
| PleI | GAGTC | 3 cut(s) | 482, 520, 1722 |
| PluTI | GGCGCC | 1 cut(s) | 1357 |
| PpsI | GAGTC | 3 cut(s) | 482, 520, 1722 |
| PscI | ACATGT | 2 cut(s) | 285, 2097 |
| PsiI | TTATAA | 1 cut(s) | 1611 |
| Psp124BI | GAGCTC | 2 cut(s) | 136, 798 |
| Psp1406I | AACGTT | 1 cut(s) | 1693 |
| Psp6I | CCWGG | 4 cut(s) | 1362, 2051, 2243, 2277 |
| PspGI | CCWGG | 4 cut(s) | 1362, 2051, 2243, 2277 |
| PspN4I | GGNNCC | 4 cut(s) | 604, 851, 1355, 2290 |
| PspPI | GGNCC | 2 cut(s) | 1301, 1810 |
| PstNI | CAGNNNCTG | 2 cut(s) | 710, 1369 |
| PsuI | RGATCY | 1 cut(s) | 602 |
| PsyI | GACNNNGTC | 1 cut(s) | 323 |
| RsaI | GTAC | 2 cut(s) | 1078, 2422 |
| RsaNI | GTAC | 2 cut(s) | 1077, 2421 |
| RseI | CAYNNNNRTG | 5 cut(s) | 107, 111, 185, 189, 223 |
| SacI | GAGCTC | 2 cut(s) | 136, 798 |
| SatI | GCNGC | 2 cut(s) | 2079, 2352 |
| Sau3AI | GATC | 4 cut(s) | 531, 541, 602, 1129 |
| Sau96I | GGNCC | 2 cut(s) | 1301, 1810 |
| SchI | GAGTC | 3 cut(s) | 482, 520, 1723 |
| ScrFI | CCNGG | 4 cut(s) | 1364, 2053, 2245, 2279 |
| SduI | GDGCHC | 3 cut(s) | 136, 214, 798 |
| SfaNI | GCATC | 2 cut(s) | 328, 2234 |
| SfoI | GGCGCC | 1 cut(s) | 1355 |
| SinI | GGWCC | 1 cut(s) | 1301 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 107, 111, 185, 189, 223 |
| SmlI | CTYRAG | 2 cut(s) | 1152, 1711 |
| SmoI | CTYRAG | 2 cut(s) | 1152, 1711 |
| SseBI | AGGCCT | 1 cut(s) | 2248 |
| SsiI | CCGC | 3 cut(s) | 1937, 2203, 2218 |
| SspDI | GGCGCC | 1 cut(s) | 1353 |
| SspMI | CTAG | 1 cut(s) | 1881 |
| SstI | GAGCTC | 2 cut(s) | 136, 798 |
| StuI | AGGCCT | 1 cut(s) | 2248 |
| StyD4I | CCNGG | 4 cut(s) | 1362, 2051, 2243, 2277 |
| StyI | CCWWGG | 1 cut(s) | 1983 |
| TaaI | ACNGT | 4 cut(s) | 712, 1803, 1856, 2327 |
| TaiI | ACGT | 2 cut(s) | 1696, 2089 |
| TaqI | TCGA | 4 cut(s) | 685, 753, 1957, 2334 |
| TatI | WGTACW | 1 cut(s) | 1076 |
| TscAI | CASTG | 1 cut(s) | 2330 |
| TseFI | GTSAC | 2 cut(s) | 31, 2321 |
| TseI | GCWGC | 2 cut(s) | 2078, 2351 |
| Tsp45I | GTSAC | 2 cut(s) | 31, 2321 |
| TspGWI | ACGGA | 1 cut(s) | 157 |
| TspRI | CASTG | 1 cut(s) | 2330 |
| Tth111I | GACNNNGTC | 1 cut(s) | 323 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1819, 2268 |
| VneI | GTGCAC | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 1 cut(s) | 1301 |
| XapI | RAATTY | 8 cut(s) | 68, 823, 916, 1538, 1840, 1873, 2121, 2330 |
| XceI | RCATGY | 9 cut(s) | 102, 112, 116, 180, 190, 194, 289, 2101, 2405 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 267 |
| XmnI | GAANNNNTTC | 1 cut(s) | 749 |
| XspI | CTAG | 1 cut(s) | 1881 |
| Zsp2I | ATGCAT | 5 cut(s) | 104, 114, 182, 192, 1029 |