MD01G1017100.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0028629
Physical Location & Seq
Reverse (-)
7656325 .. 7657816
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1017100.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGAAGAGGGTAATTCGTTGGGAGTAGTGAGAAAAGGTGCATGGACTAAAGAGGAAGACGATCTTCTCCAGCACTTCGTTCAACAGCATGGTGAAGGAAAATGGCGTCAGGTTCCTCTCAAAGCAGGTTTAAACAGATGCAGGAAAAGCTGCAGACTGAGGTGGTTGAACTACTTGAAGCCAAGTATCAAAAGAGGAGACTTCGGAGAGGATAAAATAGATCTAATGGTCAGACTTCACAAACTAGTAGGAAACAGGTGGTCAATGATTGCCGGAAGACTTCCAGGAAGAACAGCAAACGATGTGAAAAATTACTGGAGTACTCGATTAAGGTGGAAGAAGTCGGCTTCTGGTGACAAGTTGAAAAATCATAAACCCCTACAACAAGTAGCTAAAGTAGAAACAACAAAGACCGTCGTAATACGACCTCGACCACGAACCTTCTCCAAAAACTTGAATTATTTGAGCCGCAAATTAGCCGCAACTAATTCTAATATACAACAACATAATAATCAAGTTTTATTACAAGAGCCATTGGCAGTGACTTCATCATTAACACCTATAGAGATTAATGGAATTAGTGAAACCTTGTTAGGTGATGATAACAAAGACAGTAGTAGTACTGTTGAAAGAGCACTATTATGTTCTGGTTTGCAGTTAGAGGATCTCTTCACAAACTTTTGGATTGAAGAAGATGATGTTATGGCCCATACAACATCAACAACAAGAACAGGTCTCAATTGTAGTATTACTGAACAGGAAGAAGAAGGTTTGATGAGTAGGAGTGACTACTTCTTCTCCTTTGATGACATGGATATTTGGAATAACTTAAGCATGTATTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.36

Weight (kDa)

8.96

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 5.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 72 5.7e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 109 1.4e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028629)

Species Orthologous Gene IDs
malus_domestica MD01G1017100.v1.1
pyrus_communis pycom01g04770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AciI CCGC 2 cut(s) 469, 480
AclWI GGATC 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 2 cut(s) 322, 622
AflII CTTAAG 1 cut(s) 829
AgsI TTSAA 8 cut(s) 83, 169, 178, 364, 457, 629, 689, 844
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 2 cut(s) 150, 392
AluI AGCT 2 cut(s) 150, 392
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 2 cut(s) 192, 740
AlwI GGATC 1 cut(s) 672
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 1 cut(s) 150
AseI ATTAAT 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 3 cut(s) 104, 365, 608
BbsI GAAGAC 2 cut(s) 63, 283
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 192, 740
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 151, 561
BfrI CTTAAG 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 220
BisI GCNGC 3 cut(s) 151, 469, 480
BlsI GCNGC 3 cut(s) 152, 470, 481
BmcAI AGTACT 2 cut(s) 322, 622
Bme1390I CCNGG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 63, 283
BpmI CTGGAG 2 cut(s) 53, 337
BsaHI GRCGYC 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 740
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bse1I ACTGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 137
BshFI GGCC 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 1 cut(s) 273
BsmAI GTCTC 2 cut(s) 192, 740
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 3 cut(s) 61, 220, 664
BspACI CCGC 2 cut(s) 469, 480
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 672
BspTI CTTAAG 1 cut(s) 829
BspTNI GGTCTC 1 cut(s) 740
BsrI ACTGG 1 cut(s) 320
BssMI GATC 3 cut(s) 61, 220, 664
BssNI GRCGYC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 415, 614, 625
Bst6I CTCTTC 1 cut(s) 674
BstACI GRCGYC 1 cut(s) 106
BstAFI CTTAAG 1 cut(s) 829
BstDEI CTNAG 1 cut(s) 158
BstKTI GATC 3 cut(s) 64, 223, 667
BstMAI GTCTC 2 cut(s) 192, 740
BstMBI GATC 3 cut(s) 61, 220, 664
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 151, 561
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 2 cut(s) 63, 283
BstX2I RGATCY 2 cut(s) 220, 664
BstYI RGATCY 2 cut(s) 220, 664
BsuRI GGCC 1 cut(s) 707
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 706
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 321, 621
CviAII CATG 4 cut(s) 42, 89, 811, 835
CviJI RGCY 8 cut(s) 150, 181, 347, 392, 468, 479, 532, 707
CviKI_1 RGCY 8 cut(s) 150, 181, 347, 392, 468, 479, 532, 707
CviQI GTAC 2 cut(s) 321, 621
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 63, 222, 666
DpnII GATC 3 cut(s) 61, 220, 664
DraI TTTAAA 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco31I GGTCTC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 4 cut(s) 45, 92, 814, 838
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 4 cut(s) 41, 88, 810, 834
Fnu4HI GCNGC 3 cut(s) 151, 469, 480
Fsp4HI GCNGC 3 cut(s) 151, 469, 480
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 151, 469, 480
GsuI CTGGAG 2 cut(s) 53, 337
HaeIII GGCC 1 cut(s) 707
HapII CCGG 1 cut(s) 273
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 4 cut(s) 45, 92, 814, 838
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 104, 365, 608
Hpy188I TCNGA 2 cut(s) 206, 233
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 89, 451, 761
HpyCH4III ACNGT 3 cut(s) 415, 614, 625
HpyCH4V TGCA 4 cut(s) 41, 141, 153, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 45, 92, 814, 838
Kzo9I GATC 3 cut(s) 61, 220, 664
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 353, 541, 785
MalI GATC 3 cut(s) 63, 222, 666
MboI GATC 3 cut(s) 61, 220, 664
MfeI CAATTG 1 cut(s) 739
MflI RGATCY 2 cut(s) 220, 664
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 7 cut(s) 13, 310, 457, 473, 487, 576, 739
MnlI CCTC 7 cut(s) 46, 126, 153, 188, 202, 438, 655
MseI TTAA 5 cut(s) 131, 329, 554, 570, 830
MslI CAYNNNNRTG 1 cut(s) 640
MspCI CTTAAG 1 cut(s) 829
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 285
MssI GTTTAAAC 1 cut(s) 132
MunI CAATTG 1 cut(s) 739
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 3 cut(s) 61, 220, 664
NlaIII CATG 4 cut(s) 45, 92, 814, 838
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 3 cut(s) 353, 541, 785
NspI RCATGY 1 cut(s) 838
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 3 cut(s) 152, 470, 481
PmeI GTTTAAAC 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 706
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 2 cut(s) 220, 664
RsaI GTAC 2 cut(s) 322, 622
RsaNI GTAC 2 cut(s) 321, 621
RseI CAYNNNNRTG 1 cut(s) 640
SaqAI TTAA 5 cut(s) 131, 329, 554, 570, 830
SatI GCNGC 3 cut(s) 151, 469, 480
Sau3AI GATC 3 cut(s) 61, 220, 664
Sau96I GGNCC 1 cut(s) 706
ScaI AGTACT 2 cut(s) 322, 622
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 2 cut(s) 151, 561
SmiMI CAYNNNNRTG 1 cut(s) 640
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 7 cut(s) 13, 310, 457, 473, 487, 576, 739
SsiI CCGC 2 cut(s) 469, 480
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 3 cut(s) 415, 614, 625
TaqI TCGA 2 cut(s) 325, 430
TasI AATT 7 cut(s) 13, 310, 457, 473, 487, 576, 739
TatI WGTACW 2 cut(s) 320, 620
TauI GCSGC 2 cut(s) 471, 482
Tru1I TTAA 5 cut(s) 131, 329, 554, 570, 830
Tru9I TTAA 5 cut(s) 131, 329, 554, 570, 830
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 3 cut(s) 353, 541, 785
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 3 cut(s) 353, 541, 785
TspDTI ATGAA 1 cut(s) 537
TspRI CASTG 1 cut(s) 546
Vha464I CTTAAG 1 cut(s) 829
VspI ATTAAT 1 cut(s) 570
XceI RCATGY 1 cut(s) 838
XspI CTAG 1 cut(s) 245
ZrmI AGTACT 2 cut(s) 322, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.