pycom01g04770
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0028629
Physical Location & Seq
Reverse (-)
3961632 .. 3963113
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04770.1

Sequence Viewer

Length: 861 bp
ATGGAAGAGAGTAATTCGTTGGGAGTAGTGAGAAAAGGTGCATGGACTAAAGAGGAAGACGATCTTCTCCGGCACTTCGTTCAACAGCATGGTGAAGGAAAATGGCATCAGGTTCCTCTCAAAGCAGGTTTAAGCAGATGCAGGAAAAGCTGCAGACTGAGGTGGTTGAACTACTTGAAGCCAAGTATCAAAAGAGGAGACTTTGGAGAGGATGAAATAGATCTAATGATCAGACTTCGCAAACTAGTAGGAAACAGGTGGTCAATGATTGCCGGAAGACTTCCAGGAAGAACAGCAAACGATGTGAAAAATTACTGGAGTACTCGATTAAGGAGGAAGAAGTCGGCTTCATGTGACAAGTTGAAAAATCATAAACCCCTACAACAAGTAGCTAAAGTAGAAACAACAAAAACCGTCGTAAGACGACCTCGACCACGAACCTCCTCCAAAAACTTGAATTATTTGAGCTGTAAATTAGCTGCAACTAATTCTAATTTACAACAACATAATAATCTAGTGTTATTACAAGAGCCATTTGCAGTGACTTCATCATCAATACCTATAGAGATTAATGGAATTAGTGAAACCTTGTTAGGTGATGATAATAAAGACAGTAGTAGTACTGTTGAAAGAGCACTATTATGTTCTGGTTTGCAGTTAGAGGAGGAACATGATCTCTTCACAAACTTTTGGATTGAAGAAGATGATGTTATGGCCCATACAACATCAACAACAACAAGAATAGGTGTCAATTGTAGTACTACTCAACAGGAAGAAGGTTTGATGAGTAGGAGGGACTACTTCTTCTCCTTTGATGACATGGATATTTGGAACAACTCAAAAAGCATGTATTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.88

Weight (kDa)

9.08

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 74 1.2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 109 1.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028629)

Species Orthologous Gene IDs
malus_domestica MD01G1017100.v1.1
pyrus_communis pycom01g04770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AfaI GTAC 3 cut(s) 322, 622, 760
AgsI TTSAA 8 cut(s) 83, 169, 178, 364, 457, 629, 698, 856
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 4 cut(s) 150, 392, 468, 479
AluI AGCT 4 cut(s) 150, 392, 468, 479
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 192
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 150, 479
AseI ATTAAT 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 715
AsuHPI GGTGA 2 cut(s) 104, 608
BbsI GAAGAC 2 cut(s) 63, 283
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 137, 466
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 192
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 2 cut(s) 245, 515
BfmI CTRYAG 2 cut(s) 151, 561
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 151, 480
BlsI GCNGC 2 cut(s) 152, 481
BmcAI AGTACT 3 cut(s) 322, 622, 760
Bme1390I CCNGG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 2 cut(s) 115, 128
BpiI GAAGAC 2 cut(s) 63, 283
BpmI CTGGAG 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bse1I ACTGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 3 cut(s) 210, 433, 677
BseXI GCAGC 2 cut(s) 137, 466
BshFI GGCC 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 2 cut(s) 70, 273
BslFI GGGAC 1 cut(s) 809
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 4 cut(s) 61, 220, 228, 673
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 320
BssMI GATC 4 cut(s) 61, 220, 228, 673
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 415, 614, 625
Bst6I CTCTTC 1 cut(s) 683
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 4 cut(s) 64, 223, 231, 676
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 61, 220, 228, 673
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 151, 561
BstV1I GCAGC 2 cut(s) 137, 466
BstV2I GAAGAC 2 cut(s) 63, 283
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 715
Csp6I GTAC 3 cut(s) 321, 621, 759
CviAII CATG 6 cut(s) 42, 89, 351, 671, 820, 847
CviJI RGCY 8 cut(s) 150, 181, 347, 392, 468, 479, 532, 716
CviKI_1 RGCY 8 cut(s) 150, 181, 347, 392, 468, 479, 532, 716
CviQI GTAC 3 cut(s) 321, 621, 759
DdeI CTNAG 1 cut(s) 158
DpnI GATC 4 cut(s) 63, 222, 230, 675
DpnII GATC 4 cut(s) 61, 220, 228, 673
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 6 cut(s) 45, 92, 354, 674, 823, 850
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 809
FatI CATG 6 cut(s) 41, 88, 350, 670, 819, 846
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 151, 480
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 151, 480
FspBI CTAG 2 cut(s) 245, 515
GluI GCNGC 2 cut(s) 151, 480
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 1 cut(s) 716
HapII CCGG 2 cut(s) 70, 273
Hin1II CATG 6 cut(s) 45, 92, 354, 674, 823, 850
HpaII CCGG 2 cut(s) 70, 273
HphI GGTGA 2 cut(s) 104, 608
Hpy188I TCNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 2 cut(s) 89, 770
HpyCH4III ACNGT 3 cut(s) 415, 614, 625
HpyCH4V TGCA 6 cut(s) 41, 141, 153, 482, 539, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 6 cut(s) 45, 92, 354, 674, 823, 850
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 4 cut(s) 61, 220, 228, 673
Lsp1109I GCAGC 2 cut(s) 137, 466
LweI GCATC 2 cut(s) 115, 128
MaeI CTAG 2 cut(s) 245, 515
MaeIII GTNAC 2 cut(s) 353, 541
MalI GATC 4 cut(s) 63, 222, 230, 675
MboI GATC 4 cut(s) 61, 220, 228, 673
MfeI CAATTG 1 cut(s) 751
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 8 cut(s) 13, 310, 457, 473, 487, 493, 576, 751
MseI TTAA 3 cut(s) 131, 329, 570
MslI CAYNNNNRTG 1 cut(s) 640
MspI CCGG 2 cut(s) 70, 273
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 751
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 4 cut(s) 61, 220, 228, 673
NlaIII CATG 6 cut(s) 45, 92, 354, 674, 823, 850
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 2 cut(s) 353, 541
NspI RCATGY 1 cut(s) 850
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 2 cut(s) 152, 481
PshBI ATTAAT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 715
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 3 cut(s) 322, 622, 760
RsaNI GTAC 3 cut(s) 321, 621, 759
RseI CAYNNNNRTG 1 cut(s) 640
SaqAI TTAA 3 cut(s) 131, 329, 570
SatI GCNGC 2 cut(s) 151, 480
Sau3AI GATC 4 cut(s) 61, 220, 228, 673
Sau96I GGNCC 1 cut(s) 715
ScaI AGTACT 3 cut(s) 322, 622, 760
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 2 cut(s) 115, 128
SfcI CTRYAG 2 cut(s) 151, 561
SmiMI CAYNNNNRTG 1 cut(s) 640
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 8 cut(s) 13, 310, 457, 473, 487, 493, 576, 751
SspMI CTAG 2 cut(s) 245, 515
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 3 cut(s) 415, 614, 625
TaqI TCGA 2 cut(s) 325, 430
TasI AATT 8 cut(s) 13, 310, 457, 473, 487, 493, 576, 751
TatI WGTACW 3 cut(s) 320, 620, 758
Tru1I TTAA 3 cut(s) 131, 329, 570
Tru9I TTAA 3 cut(s) 131, 329, 570
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 2 cut(s) 353, 541
TseI GCWGC 2 cut(s) 150, 479
Tsp45I GTSAC 2 cut(s) 353, 541
TspDTI ATGAA 3 cut(s) 228, 339, 537
TspRI CASTG 1 cut(s) 546
VspI ATTAAT 1 cut(s) 570
XceI RCATGY 1 cut(s) 850
XspI CTAG 2 cut(s) 245, 515
ZrmI AGTACT 3 cut(s) 322, 622, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.