Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011192

Physical Location & Seq

Genomic Coordinates Forward (+)

9871335 .. 9873622

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1026200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTGCGACGAACTCCAAAACCGAGAAGGACGAAGCTCTGCGTCTGTGCAGAGAGCGTAAAAGATTGATCAAGCAAGCAATTGATTCAAGGTATGCTTTAGCAGCTTCTCATGTATCTTACACCAACTCTCTAAGAAACATTGGCATTGCCCTCCGCCGCTACGCCGAGGCTGAGGTGTTGATAGAGTCTTCTCTCTCCAACTCCGACAAGACCCCATCGCACTCCTCCTACCCCTCGCCCTCGCCGTCGCCTTTGGCCGACGCTTCGGACTCGCCTTTGTGCAACGAGAGACCCGCTTCGCCTCCTGTGGCAAGGTTGAGCTATATGAGGTCGGGAGGTGCTGCTGCTGTGACGGTAAGGTTCAATCCGGTTAGCAGTAGTTACGTGGATGAGGATATTCCACTGCCGCCGCCGCCTCCTCCTCTGCCGGATGAAGATTCTTCCTGGGATTACTTTGATCCTGTGGATGAAAGTGAGAGCTTCAGGTTTGTGGGAAGTAGTGGAGTGGATGTGAATTTTGATAATATCAAAGGGTGGAGACAGGGGAGGAATGAAGAAGCTAGTCATAGTGTGGAGGAGATGGGAAGATGGGCAAAGGTTGGATTAGATGGAAGTAAGGAACATTTTGAAGTTTCTGGTAATTCAATGAACCAAAACGATAGTAGTGTAGATGATAACGCGAATTCGCTAAACTCGGGAGTTGATGGGTCTCTGCAAACAGGCAATGGTGAAGGGAGACAGTTAGTTGTGGGATGCAATGCCAATGGTGGAGCTACAAGTTTGACAGGCAAAGTCGGTGTTGAGAAGTCTGGTTCAAAGAGGGAGAAGAATGTGGGGGAGAAGGATTTATGTGCAGAAAGAGAGGACCCTTCAGAGTTTATTACTCACAGAGCTAAAGATTTTCTTTCAAGCATAAAGGATATCGAGCACCGCTTTTTTAGGGCTGCAGAATCGGGAAGAGGGGTCTCCAGGATGCTTGAGTCAAACAAAATAAGGGTTGGATATTCGGGGGCAAAAGGTACATCATCTGCTTTGGCTTTTCTCGTGGCTTTCCAGCTCGTTTTCTGCCCGGGAAAGACTGCACTTGTTTATCATGGAAAGCATGCGAATTTGTTGTGTGGCATTAATTGTGGAATAAGCTGGTTCACTTTAAGTTACATGTCGTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

392

Amino Acids

42.29

Weight (kDa)

5.84

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 59	2.2e-26	Protein of unknown function (DUF630)
DUF632	PF04782	303 - 338	4.7e-06	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39790
fragaria_vesca	FvH4_1g21260
malus_domestica	MD01G1026200.v1.1 MD01G1026300.v1.1 MD15G1327200.v1.1
prunus_persica	Prupe.6G181700_v2.0.a1 Prupe.6G181700_v2.0.a1 Prupe.6G181700_v2.0.a1
pyrus_communis	pycom01g05450 pycom395g00030
rosa_chinensis	RchiOBHm_Chr2g0115101
rosa_laevigata	RLG00000018157
rosa_multiflora	Rmu_sc0002784.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130570
rosa_rugosa	Rorug02G0193500
rosa_samantha	Rh2AG251900 Rh2BG261500 Rh2CG256400 Rh2DG260000
rosa_wichuraiana	Rw2G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	683
AciI	CCGC	7 cut(s)	157, 160, 297, 410, 413, 416, 934
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	517, 685, 1111
AcuI	CTGAAG	2 cut(s)	469, 858
AfaI	GTAC	1 cut(s)	1024
AflIII	ACRYGT	1 cut(s)	1161
AgsI	TTSAA	6 cut(s)	90, 367, 632, 648, 819, 912
AjnI	CCWGG	2 cut(s)	446, 971
AluBI	AGCT	9 cut(s)	38, 107, 324, 483, 563, 776, 896, 1060, 1143
AluI	AGCT	9 cut(s)	38, 107, 324, 483, 563, 776, 896, 1060, 1143
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	5 cut(s)	286, 535, 717, 733, 973
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	2 cut(s)	697, 1072
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	4 cut(s)	104, 344, 347, 947
ApoI	RAATTY	3 cut(s)	517, 685, 1111
AseI	ATTAAT	1 cut(s)	1128
AspS9I	GGNCC	1 cut(s)	868
AsuC2I	CCSGG	2 cut(s)	1073, 1074
AsuHPI	GGTGA	1 cut(s)	743
AvaI	CYCGRG	2 cut(s)	697, 1072
AvaII	GGWCC	1 cut(s)	868
BauI	CACGAG	1 cut(s)	1046
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	933
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	116, 331, 334, 934
BccI	CCATC	5 cut(s)	226, 577, 585, 605, 701
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	448, 973
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	1073, 1074
BcoDI	GTCTC	5 cut(s)	286, 535, 717, 733, 973
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	948
BisI	GCNGC	8 cut(s)	105, 160, 345, 348, 410, 413, 416, 948
BlsI	GCNGC	8 cut(s)	106, 161, 346, 349, 411, 414, 417, 949
Bme1390I	CCNGG	4 cut(s)	448, 973, 1073, 1074
Bme18I	GGWCC	1 cut(s)	868
BmeT110I	CYCGRG	2 cut(s)	697, 1072
BmgT120I	GGNCC	1 cut(s)	868
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	4 cut(s)	448, 973, 1073, 1074
BmsI	GCATC	2 cut(s)	746, 966
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	955
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	1001
BpuMI	CCSGG	2 cut(s)	1073, 1074
BsaAI	YACGTR	1 cut(s)	388
BsaI	GGTCTC	3 cut(s)	286, 717, 973
BsaJI	CCNNGG	3 cut(s)	168, 447, 1072
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bse3DI	GCAATG	3 cut(s)	147, 733, 766
BseBI	CCWGG	2 cut(s)	448, 973
BseDI	CCNNGG	3 cut(s)	168, 447, 1072
BseGI	GGATG	6 cut(s)	397, 439, 475, 517, 761, 981
BseMI	GCAATG	3 cut(s)	147, 733, 766
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	4 cut(s)	217, 411, 414, 593
BseXI	GCAGC	4 cut(s)	116, 331, 334, 934
BsgI	GTGCAG	3 cut(s)	70, 876, 1068
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	933
BsiHKCI	CYCGRG	2 cut(s)	697, 1072
BsiSI	CCGG	3 cut(s)	371, 431, 1073
BsmAI	GTCTC	5 cut(s)	286, 535, 717, 733, 973
BsnI	GGCC	1 cut(s)	260
Bso31I	GGTCTC	3 cut(s)	286, 717, 973
BsoBI	CYCGRG	2 cut(s)	697, 1072
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	2 cut(s)	69, 460
BspACI	CCGC	7 cut(s)	157, 160, 297, 410, 413, 416, 934
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	683
BspLI	GGNNCC	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	1 cut(s)	455
BspTNI	GGTCTC	3 cut(s)	286, 717, 973
BsrDI	GCAATG	3 cut(s)	147, 733, 766
BssECI	CCNNGG	3 cut(s)	168, 447, 1072
BssMI	GATC	2 cut(s)	69, 460
BssSI	CACGAG	1 cut(s)	1046
Bst2BI	CACGAG	1 cut(s)	1046
Bst2UI	CCWGG	2 cut(s)	448, 973
Bst4CI	ACNGT	2 cut(s)	358, 744
Bst6I	CTCTTC	1 cut(s)	955
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	78, 1107
BstDEI	CTNAG	2 cut(s)	134, 174
BstF5I	GGATG	6 cut(s)	397, 439, 475, 517, 761, 981
BstFNI	CGCG	1 cut(s)	683
BstKTI	GATC	2 cut(s)	72, 463
BstMAI	GTCTC	5 cut(s)	286, 535, 717, 733, 973
BstMBI	GATC	2 cut(s)	69, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 415
BstNI	CCWGG	2 cut(s)	448, 973
BstNSI	RCATGY	2 cut(s)	1109, 1165
BstSCI	CCNGG	4 cut(s)	446, 971, 1071, 1072
BstSFI	CTRYAG	1 cut(s)	948
BstUI	CGCG	1 cut(s)	683
BstV1I	GCAGC	4 cut(s)	116, 331, 334, 934
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	6 cut(s)	397, 439, 475, 517, 761, 981
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	78, 1107
Cfr13I	GGNCC	1 cut(s)	868
Cfr9I	CCCGGG	1 cut(s)	1072
CseI	GACGC	2 cut(s)	32, 272
Csp6I	GTAC	1 cut(s)	1023
CviAII	CATG	4 cut(s)	113, 1097, 1106, 1162
CviQI	GTAC	1 cut(s)	1023
DdeI	CTNAG	2 cut(s)	134, 174
DpnI	GATC	2 cut(s)	71, 462
DpnII	GATC	2 cut(s)	69, 460
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	955
EarI	CTCTTC	1 cut(s)	955
EciI	GGCGGA	1 cut(s)	146
Eco31I	GGTCTC	3 cut(s)	286, 717, 973
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	1 cut(s)	868
Eco57I	CTGAAG	2 cut(s)	469, 858
Eco88I	CYCGRG	2 cut(s)	697, 1072
EcoO109I	RGGNCCY	1 cut(s)	868
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	446, 971
EcoRV	GATATC	1 cut(s)	925
FaeI	CATG	4 cut(s)	116, 1100, 1109, 1165
FalI	AAGNNNNNCTT	4 cut(s)	82, 114, 891, 923
FatI	CATG	4 cut(s)	112, 1096, 1105, 1161
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	8 cut(s)	105, 160, 345, 348, 410, 413, 416, 948
FokI	GGATG	6 cut(s)	404, 446, 482, 524, 768, 988
Fsp4HI	GCNGC	8 cut(s)	105, 160, 345, 348, 410, 413, 416, 948
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	8 cut(s)	105, 160, 345, 348, 410, 413, 416, 948
GsuI	CTGGAG	1 cut(s)	955
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	3 cut(s)	371, 431, 1073
HgaI	GACGC	2 cut(s)	32, 272
Hin1II	CATG	4 cut(s)	116, 1100, 1109, 1165
HinfI	GANTC	6 cut(s)	86, 188, 272, 440, 953, 983
HpaII	CCGG	3 cut(s)	371, 431, 1073
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	1 cut(s)	1149
Hpy188I	TCNGA	3 cut(s)	208, 271, 877
Hpy188III	TCNNGA	3 cut(s)	336, 699, 957
Hpy8I	GTNNAC	1 cut(s)	1149
Hpy99I	CGWCG	3 cut(s)	13, 253, 266
HpyAV	CCTTC	4 cut(s)	22, 728, 838, 882
HpyCH4III	ACNGT	2 cut(s)	358, 744
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	8 cut(s)	51, 285, 718, 759, 857, 950, 1085, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 415
HpyF3I	CTNAG	2 cut(s)	134, 174
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	116, 1100, 1109, 1165
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 460
LmnI	GCTCC	1 cut(s)	773
Lsp1109I	GCAGC	4 cut(s)	116, 331, 334, 934
LweI	GCATC	2 cut(s)	746, 966
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	352, 383, 1157
MalI	GATC	2 cut(s)	71, 462
MboI	GATC	2 cut(s)	69, 460
MboII	GAAGA	7 cut(s)	183, 435, 449, 569, 600, 841, 972
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	6 cut(s)	81, 517, 643, 685, 1111, 1129
MlyI	GAGTC	3 cut(s)	197, 266, 992
MmeI	TCCRAC	4 cut(s)	225, 231, 583, 982
MseI	TTAA	2 cut(s)	1128, 1154
MspI	CCGG	3 cut(s)	371, 431, 1073
MspR9I	CCNGG	4 cut(s)	448, 973, 1073, 1074
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	448, 973
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	2 cut(s)	104, 415
NciI	CCSGG	2 cut(s)	1073, 1074
NdeII	GATC	2 cut(s)	69, 460
NlaIII	CATG	4 cut(s)	116, 1100, 1109, 1165
NlaIV	GGNNCC	1 cut(s)	870
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	2 cut(s)	1109, 1165
PaeI	GCATGC	1 cut(s)	1109
PciI	ACATGT	1 cut(s)	1161
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	86, 440, 953
PfoI	TCCNGGA	1 cut(s)	971
PkrI	GCNGC	8 cut(s)	106, 161, 346, 349, 411, 414, 417, 949
PleI	GAGTC	3 cut(s)	196, 266, 991
PpsI	GAGTC	3 cut(s)	196, 266, 991
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	868
PscI	ACATGT	1 cut(s)	1161
PshBI	ATTAAT	1 cut(s)	1128
Psp5II	RGGWCCY	1 cut(s)	868
Psp6I	CCWGG	2 cut(s)	446, 971
PspGI	CCWGG	2 cut(s)	446, 971
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	1 cut(s)	868
PspPPI	RGGWCCY	1 cut(s)	868
PstI	CTGCAG	1 cut(s)	952
RsaI	GTAC	1 cut(s)	1024
RsaNI	GTAC	1 cut(s)	1023
SaqAI	TTAA	2 cut(s)	1128, 1154
SatI	GCNGC	8 cut(s)	105, 160, 345, 348, 410, 413, 416, 948
Sau3AI	GATC	2 cut(s)	69, 460
Sau96I	GGNCC	1 cut(s)	868
SchI	GAGTC	3 cut(s)	197, 266, 992
ScrFI	CCNGG	4 cut(s)	448, 973, 1073, 1074
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	2 cut(s)	746, 966
SfcI	CTRYAG	1 cut(s)	948
SinI	GGWCC	1 cut(s)	868
SmaI	CCCGGG	1 cut(s)	1074
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
SphI	GCATGC	1 cut(s)	1109
Sse9I	AATT	6 cut(s)	81, 517, 643, 685, 1111, 1129
SsiI	CCGC	7 cut(s)	157, 160, 297, 410, 413, 416, 934
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	4 cut(s)	446, 971, 1071, 1072
TaaI	ACNGT	2 cut(s)	358, 744
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	927
TasI	AATT	6 cut(s)	81, 517, 643, 685, 1111, 1129
TauI	GCSGC	4 cut(s)	162, 412, 415, 418
TfiI	GAWTC	3 cut(s)	86, 440, 953
Tru1I	TTAA	2 cut(s)	1128, 1154
Tru9I	TTAA	2 cut(s)	1128, 1154
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	4 cut(s)	104, 344, 347, 947
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	450, 486, 570, 665
TspMI	CCCGGG	1 cut(s)	1072
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	868
VspI	ATTAAT	1 cut(s)	1128
XapI	RAATTY	3 cut(s)	517, 685, 1111
XceI	RCATGY	2 cut(s)	1109, 1165
XmaI	CCCGGG	1 cut(s)	1072
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.