MD01G1128600.v1.1
HSP70 Family

ATP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0024377
Physical Location & Seq
Forward (+)
23991287 .. 23992242
956 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1128600.v1.1.491

Sequence Viewer

Length: 546 bp
ATGGGTTTTTTTTTTCCCGATAGAAGAAATAAGGAAGGGAGAGCTCATTGTCAGTTAGAGAGCTCATTTTTTGCCGAGAGCAAGGAGAGTTGTAGAGAGCCCAAAACAAAGAAGAAGTTGCTGCTTCATTTGCTGTGCAAGGGCATTTATCCAGATGAAGCTGTGGCATATGGTTCAGCTGTTCAAGCTGCCGTGTTGAGTGAGAATAATGAAAATGGGAAGCTTCAAGACTTTGCACTCTTGGATGTCATCCCTCTATTACTTGGGGTGGAGACAACTAAGACAAGGTGGGAAAGTGGTTCTGACGATAAACATTTCATGCTAGTTGTGATCCCAAGAAACACCAGAGTTCCGATAAAAGAGAACGTTACTTTGTTTACTTCGGTTGACAACCAAGCTGTGGCCAGATTTTCAATTTATGAGGGCGAGAGTTCATCAACCTTAATAACGTTTTGGGTGGATTTCACATCCATGACATTTCTCCTGCTCCTGCCAGAGCTGCTAAATTCAAACTTTGCTTTGATATTGATGAAAATGGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP70

Protein Analysis

182

Amino Acids

20.45

Weight (kDa)

5.95

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 43 - 145 3.6e-15 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024377)

Species Orthologous Gene IDs
malus_domestica MD01G1128600.v1.1 MD01G1130100.v1.1
pyrus_communis pycom01g15260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 400
AclI AACGTT 2 cut(s) 366, 449
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 4 cut(s) 185, 227, 414, 510
AluBI AGCT 8 cut(s) 44, 63, 161, 179, 188, 223, 398, 499
AluI AGCT 8 cut(s) 44, 63, 161, 179, 188, 223, 398, 499
Alw21I GWGCWC 2 cut(s) 46, 65
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 325
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 121, 188, 499
ApoI RAATTY 1 cut(s) 505
BalI TGGCCA 1 cut(s) 404
BanII GRGCYC 3 cut(s) 46, 65, 102
Bbv12I GWGCWC 2 cut(s) 46, 65
BbvI GCAGC 3 cut(s) 108, 175, 486
BceAI ACGGC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 323
BisI GCNGC 3 cut(s) 122, 189, 500
BlsI GCNGC 3 cut(s) 123, 190, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 249, 250, 467
BseLI CCNNNNNNNGG 1 cut(s) 400
BseXI GCAGC 3 cut(s) 108, 175, 486
BshFI GGCC 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 46, 65
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 266
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 3 cut(s) 46, 65, 102
Bsp143I GATC 1 cut(s) 330
BspANI GGCC 1 cut(s) 404
BspPI GGATC 1 cut(s) 325
BssMI GATC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 249, 250, 467
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 130, 185, 499
BstV1I GCAGC 3 cut(s) 108, 175, 486
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 3 cut(s) 249, 250, 467
CviAII CATG 2 cut(s) 319, 472
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 402
Ecl136II GAGCTC 2 cut(s) 44, 63
Eco24I GRGCYC 3 cut(s) 46, 65, 102
Eco53kI GAGCTC 2 cut(s) 44, 63
EcoICRI GAGCTC 2 cut(s) 44, 63
EcoT38I GRGCYC 3 cut(s) 46, 65, 102
FaeI CATG 2 cut(s) 322, 475
FaiI YATR 5 cut(s) 169, 171, 320, 420, 473
FatI CATG 2 cut(s) 318, 471
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 122, 189, 500
FokI GGATG 3 cut(s) 236, 257, 454
FriOI GRGCYC 3 cut(s) 46, 65, 102
Fsp4HI GCNGC 3 cut(s) 122, 189, 500
FspBI CTAG 1 cut(s) 323
GluI GCNGC 3 cut(s) 122, 189, 500
HaeIII GGCC 1 cut(s) 404
Hin1II CATG 2 cut(s) 322, 475
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 378, 388
Hpy188I TCNGA 2 cut(s) 304, 354
Hpy188III TCNNGA 4 cut(s) 17, 152, 227, 543
Hpy8I GTNNAC 2 cut(s) 378, 388
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 366, 449
HpyCH4V TGCA 2 cut(s) 138, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 185, 499
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 2 cut(s) 366, 449
Hsp92II CATG 2 cut(s) 322, 475
Kzo9I GATC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 492
LpnPI CCDG 6 cut(s) 165, 358, 418, 497, 503, 507
Lsp1109I GCAGC 3 cut(s) 108, 175, 486
MaeI CTAG 1 cut(s) 323
MaeII ACGT 2 cut(s) 366, 449
MaeIII GTNAC 1 cut(s) 367
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 2 cut(s) 36, 124
MhlI GDGCHC 3 cut(s) 46, 65, 102
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 2 cut(s) 414, 505
MluNI TGGCCA 1 cut(s) 404
MnlI CCTC 2 cut(s) 264, 415
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 130, 185, 499
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 330
NlaIII CATG 2 cut(s) 322, 475
NmeAIII GCCGAG 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 3 cut(s) 123, 190, 501
Psp124BI GAGCTC 2 cut(s) 46, 65
Psp1406I AACGTT 2 cut(s) 366, 449
PvuII CAGCTG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 2 cut(s) 46, 65
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 3 cut(s) 122, 189, 500
Sau3AI GATC 1 cut(s) 330
SduI GDGCHC 3 cut(s) 46, 65, 102
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 2 cut(s) 414, 505
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 2 cut(s) 46, 65
TaiI ACGT 2 cut(s) 369, 452
TasI AATT 2 cut(s) 414, 505
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TseI GCWGC 3 cut(s) 121, 188, 499
TspDTI ATGAA 6 cut(s) 116, 171, 225, 307, 423, 545
Van91I CCANNNNNTGG 1 cut(s) 400
XapI RAATTY 1 cut(s) 505
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.