MD01G1141000.v1.1

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0028620
Physical Location & Seq
Reverse (-)
25002183 .. 25009513
7331 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1141000.v1.1.491

Sequence Viewer

Length: 870 bp
ATGCCTGAGACAAAAAGTAGTAGCAGTTTAAGCGACCCCCGAGATGCTGATAGTGCGGATAAGAAACCGCGAGATGGATCTTCGCTTCCGGAGACGAGCCTTGGCGACGGTAAAGTTCCTTGCTTGCCAATGTTGACCTCTACTGCAAAGTGGCAGGATCTCAGGGAGGCGAGTAATGCTAAACAAACATCAGAAGGTTTACTCCAAAAAAGGAAATTTGAAACATTAGATTTGGAAGAACTCCATGAAAAGATTGAATACTTAAATGGATTTGCTCCTGCATACAGAGATCATGCTCCCACTGATATACTACTTCATCCGGGTGACAATGGGCCTACTATACCTGCACATAAACTCTTATTGGCAACAAGATCGAAAATCTTGAACATTCCAAACACGGAAGGATGCTCCAAAGCTCCAACAAACCAGGTGGACAACATAACACTGCCTGAGTTGAATCACGAAGAGCTCAAGTCTCTCGTGGATTTCCTCTATAATGCGGACCTGCTTGAAGATCAAATGAACAAGCATGTCTTCTCCTTGTCAGTCGCAGCGACTAAGTACGGAATACCATACTTGGGCAGATTTTGTGTGCGTCATATGCTCAACTCCCTGAGTTCAACCAATGCTCTCGATGCTCTGGAGGTTGCGGATGCTTGCTCCTACCAAGCACTGAAGGACAATGTACTGGATTACATTGCCATAAACATGAGTGACGTAGTTTTTTCTGCTCAATTTGAGGCCCTCGCACTCAAGAATCCGAAATTAAGCGTGCAGGTTTCAAGGGCATCAATCAAGGGTGAGAAGGAAAAATCGGCGATTAATGTGAAAAAGAATATAACTCAAGCAGGATTACGGAATTGTTTATGA

Protein Analysis

290

Amino Acids

31.75

Weight (kDa)

5.84

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 99 - 204 2.7e-09 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028620)

Species Orthologous Gene IDs
malus_domestica MD01G1141000.v1.1
pyrus_communis pycom01g16140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 352, 513, 766
AccII CGCG 1 cut(s) 70
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 4 cut(s) 56, 68, 500, 650
AclWI GGATC 2 cut(s) 85, 165
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 2 cut(s) 563, 687
AfiI CCNNNNNNNGG 2 cut(s) 74, 578
AgsI TTSAA 7 cut(s) 221, 257, 385, 457, 512, 621, 783
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 2 cut(s) 416, 469
AluI AGCT 2 cut(s) 416, 469
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 3 cut(s) 2, 86, 480
AlwI GGATC 2 cut(s) 85, 165
Ama87I CYCGRG 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 88
AoxI GGCC 2 cut(s) 332, 741
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 215
AseI ATTAAT 1 cut(s) 822
AspS9I GGNCC 3 cut(s) 332, 502, 742
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 335, 812
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 471
BauI CACGAG 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 563
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 3 cut(s) 2, 86, 480
BfuAI ACCTGC 3 cut(s) 352, 513, 766
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 321, 428
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 332, 502, 742
BmrFI CCNGG 2 cut(s) 321, 428
BmsI GCATC 5 cut(s) 34, 395, 625, 643, 797
BpiI GAAGAC 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 662
BpuEI CTTGAG 3 cut(s) 455, 737, 828
BpuMI CCSGG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 578
Bse1I ACTGG 1 cut(s) 693
Bse3DI GCAATG 1 cut(s) 696
BseAI TCCGGA 1 cut(s) 88
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 316, 410, 658
BseLI CCNNNNNNNGG 2 cut(s) 74, 578
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 175, 441, 605
BseNI ACTGG 1 cut(s) 693
BseXI GCAGC 1 cut(s) 563
BsgI GTGCAG 2 cut(s) 330, 794
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 334, 743
BsiHKAI GWGCWC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 89, 320
BslI CCNNNNNNNGG 2 cut(s) 74, 578
BsmAI GTCTC 3 cut(s) 2, 86, 480
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 2 cut(s) 334, 743
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 471
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 5 cut(s) 77, 157, 289, 371, 514
BspACI CCGC 4 cut(s) 56, 68, 500, 650
BspANI GGCC 2 cut(s) 334, 743
BspCNI CTCAG 3 cut(s) 174, 442, 606
BspEI TCCGGA 1 cut(s) 88
BspFNI CGCG 1 cut(s) 70
BspMI ACCTGC 3 cut(s) 352, 513, 766
BspPI GGATC 2 cut(s) 85, 165
BspQI GCTCTTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 696
BsrI ACTGG 1 cut(s) 693
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 5 cut(s) 77, 157, 289, 371, 514
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 125, 658, 773
BstDEI CTNAG 5 cut(s) 6, 161, 450, 558, 614
BstF5I GGATG 3 cut(s) 316, 410, 658
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 5 cut(s) 80, 160, 292, 374, 517
BstMAI GTCTC 3 cut(s) 2, 86, 480
BstMBI GATC 5 cut(s) 77, 157, 289, 371, 514
BstMWI GCNNNNNNNGC 5 cut(s) 30, 53, 176, 601, 635
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 319, 426
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 563
BstV2I GAAGAC 1 cut(s) 526
BstX2I RGATCY 2 cut(s) 77, 157
BstYI RGATCY 2 cut(s) 77, 157
BsuRI GGCC 2 cut(s) 334, 743
BtsCI GGATG 3 cut(s) 316, 410, 658
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 3 cut(s) 300, 443, 671
BveI ACCTGC 3 cut(s) 352, 513, 766
Cac8I GCNNGC 3 cut(s) 125, 658, 773
Cfr13I GGNCC 3 cut(s) 332, 502, 742
CseI GACGC 1 cut(s) 584
CsiI ACCWGGT 1 cut(s) 426
Csp6I GTAC 2 cut(s) 562, 686
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 4 cut(s) 245, 293, 530, 709
CviJI RGCY 5 cut(s) 99, 334, 416, 469, 743
CviKI_1 RGCY 5 cut(s) 99, 334, 416, 469, 743
CviQI GTAC 2 cut(s) 562, 686
DdeI CTNAG 5 cut(s) 6, 161, 450, 558, 614
DpnI GATC 5 cut(s) 79, 159, 291, 373, 516
DpnII GATC 5 cut(s) 77, 157, 289, 371, 514
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 695
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 4 cut(s) 248, 296, 533, 712
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FatI CATG 4 cut(s) 244, 292, 529, 708
FauNDI CATATG 1 cut(s) 600
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 3 cut(s) 303, 417, 665
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 552
GluI GCNGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 662
HaeIII GGCC 2 cut(s) 334, 743
HapII CCGG 2 cut(s) 89, 320
HgaI GACGC 1 cut(s) 584
Hin1II CATG 4 cut(s) 248, 296, 533, 712
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 2 cut(s) 457, 757
HpaII CCGG 2 cut(s) 89, 320
HphI GGTGA 2 cut(s) 335, 812
Hpy166II GTNNAC 3 cut(s) 135, 200, 433
Hpy188I TCNGA 2 cut(s) 193, 762
Hpy188III TCNNGA 6 cut(s) 89, 382, 461, 632, 641, 754
Hpy8I GTNNAC 3 cut(s) 135, 200, 433
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 188, 395, 670, 799
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 4 cut(s) 146, 281, 347, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 53, 176, 601, 635
HpyF3I CTNAG 5 cut(s) 6, 161, 450, 558, 614
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 4 cut(s) 248, 296, 533, 712
Kpn2I TCCGGA 1 cut(s) 88
Kzo9I GATC 5 cut(s) 77, 157, 289, 371, 514
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 5 cut(s) 280, 301, 413, 421, 665
Lsp1109I GCAGC 1 cut(s) 563
LweI GCATC 5 cut(s) 34, 395, 625, 643, 797
MabI ACCWGGT 1 cut(s) 426
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 2 cut(s) 323, 713
MalI GATC 5 cut(s) 79, 159, 291, 373, 516
MboI GATC 5 cut(s) 77, 157, 289, 371, 514
MboII GAAGA 5 cut(s) 72, 248, 476, 524, 526
MflI RGATCY 2 cut(s) 77, 157
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 4 cut(s) 215, 734, 764, 859
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 6 cut(s) 148, 160, 500, 637, 733, 755
MroI TCCGGA 1 cut(s) 88
MseI TTAA 4 cut(s) 29, 263, 767, 822
MslI CAYNNNNRTG 2 cut(s) 321, 707
MspI CCGG 2 cut(s) 89, 320
MspR9I CCNGG 2 cut(s) 321, 428
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 5 cut(s) 30, 53, 176, 601, 635
NciI CCSGG 1 cut(s) 321
NdeI CATATG 1 cut(s) 600
NdeII GATC 5 cut(s) 77, 157, 289, 371, 514
NlaIII CATG 4 cut(s) 248, 296, 533, 712
NmuCI GTSAC 2 cut(s) 323, 713
NspI RCATGY 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 457, 757
PkrI GCNGC 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspPI GGNCC 3 cut(s) 332, 502, 742
PsuI RGATCY 2 cut(s) 77, 157
RsaI GTAC 2 cut(s) 563, 687
RsaNI GTAC 2 cut(s) 562, 686
RseI CAYNNNNRTG 2 cut(s) 321, 707
SacI GAGCTC 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 4 cut(s) 29, 263, 767, 822
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 5 cut(s) 77, 157, 289, 371, 514
Sau96I GGNCC 3 cut(s) 332, 502, 742
ScrFI CCNGG 2 cut(s) 321, 428
SduI GDGCHC 1 cut(s) 471
SexAI ACCWGGT 1 cut(s) 426
SfaNI GCATC 5 cut(s) 34, 395, 625, 643, 797
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 321, 707
SmlI CTYRAG 3 cut(s) 470, 752, 843
SmoI CTYRAG 3 cut(s) 470, 752, 843
Sse9I AATT 4 cut(s) 215, 734, 764, 859
SsiI CCGC 4 cut(s) 56, 68, 500, 650
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 319, 426
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 720
TaqI TCGA 2 cut(s) 374, 633
TasI AATT 4 cut(s) 215, 734, 764, 859
TatI WGTACW 1 cut(s) 685
TfiI GAWTC 2 cut(s) 457, 757
Tru1I TTAA 4 cut(s) 29, 263, 767, 822
Tru9I TTAA 4 cut(s) 29, 263, 767, 822
TscAI CASTG 3 cut(s) 307, 450, 678
TseFI GTSAC 2 cut(s) 323, 713
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 2 cut(s) 323, 713
TspDTI ATGAA 3 cut(s) 261, 305, 536
TspGWI ACGGA 2 cut(s) 413, 579
TspRI CASTG 3 cut(s) 307, 450, 678
VpaK11BI GGWCC 1 cut(s) 502
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.