pycom01g16140

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
15816913 .. 15817296
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16140.1

Sequence Viewer

Length: 384 bp
ATGAACAAGCATGTCTTCTCCTTGTCAGTCGCAGCGACTAAGTACGGAATACCATACTTGGGCAGATTTTGTGTGCGTCATATGCTCAACTCCCTGAGTTCAGCCAATGCTCTTGATGCTCTGGAGGTTGCGGATGCTTGCTCGTACCAAGCACTGAAGGACAGTGTGCTGGACTACATTGCCATAAACATGAGTGACGTAGTTTTTTCTGTTCAATTTGAGGCCTTCGCACTCAAGAATCCGAAACTAAGCGTGCAGGTTTCAAGGGCATCATTCGAGGGTGAGAAGAAAAAATCGGCGATTAATGTGAAAAAGAATATTAACTCAAGCAGGATTACGGAATTGTTTATGAAGAAAAAGGCAGCTTTTCGTCAGGACAAGTAA

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

9.63

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028620)

Species Orthologous Gene IDs
malus_domestica MD01G1141000.v1.1
pyrus_communis pycom01g16140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 44, 146
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 215, 264
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 32, 362
AseI ATTAAT 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 2 cut(s) 44, 374
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 2 cut(s) 33, 363
BlsI GCNGC 2 cut(s) 34, 364
BmsI GCATC 3 cut(s) 106, 124, 278
BpiI GAAGAC 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 218, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 177
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 44, 374
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 224
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 139, 254
BstDEI CTNAG 3 cut(s) 39, 95, 248
BstF5I GGATG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 82, 116
BstNSI RCATGY 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 44, 374
BstV2I GAAGAC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 152, 169
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 139, 254
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 43, 145
CviAII CATG 2 cut(s) 11, 190
CviJI RGCY 3 cut(s) 104, 224, 365
CviKI_1 RGCY 3 cut(s) 104, 224, 365
CviQI GTAC 2 cut(s) 43, 145
DdeI CTNAG 3 cut(s) 39, 95, 248
Eco147I AGGCCT 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 176
FaeI CATG 2 cut(s) 14, 193
FaiI YATR 7 cut(s) 12, 55, 81, 83, 185, 191, 350
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 2 cut(s) 10, 189
FauNDI CATATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 33, 363
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 33, 363
GluI GCNGC 2 cut(s) 33, 363
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 224
HgaI GACGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 14, 193
HinfI GANTC 1 cut(s) 238
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 4 cut(s) 113, 122, 235, 374
HpyAV CCTTC 2 cut(s) 151, 235
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 116
HpyF3I CTNAG 3 cut(s) 39, 95, 248
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 14, 193
LpnPI CCDG 6 cut(s) 107, 107, 155, 242, 316, 359
Lsp1109I GCAGC 2 cut(s) 44, 374
LweI GCATC 3 cut(s) 106, 124, 278
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 3 cut(s) 7, 298, 364
MluCI AATT 2 cut(s) 215, 341
MnlI CCTC 3 cut(s) 118, 214, 271
MseI TTAA 2 cut(s) 303, 321
MslI CAYNNNNRTG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 82, 116
NdeI CATATG 1 cut(s) 81
NlaIII CATG 2 cut(s) 14, 193
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 14
PceI AGGCCT 1 cut(s) 224
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 34, 364
PshBI ATTAAT 1 cut(s) 303
RsaI GTAC 2 cut(s) 44, 146
RsaNI GTAC 2 cut(s) 43, 145
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 303, 321
SatI GCNGC 2 cut(s) 33, 363
SetI ASST 4 cut(s) 129, 201, 261, 367
SfaNI GCATC 3 cut(s) 106, 124, 278
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 233, 325
SmoI CTYRAG 2 cut(s) 233, 325
Sse9I AATT 2 cut(s) 215, 341
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 319
StuI AGGCCT 1 cut(s) 224
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 276
TasI AATT 2 cut(s) 215, 341
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 303, 321
Tru9I TTAA 2 cut(s) 303, 321
TscAI CASTG 2 cut(s) 159, 169
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 32, 362
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 17, 365
TspGWI ACGGA 2 cut(s) 60, 353
TspRI CASTG 2 cut(s) 159, 169
VspI ATTAAT 1 cut(s) 303
XceI RCATGY 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.