Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0024385

Physical Location & Seq

Genomic Coordinates Reverse (-)

25974325 .. 25976635

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1151600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACAGTGCTTGTATGTTTCATTGTGATATTCTTAATGATGACGATGAGGAGTGGAACGAGTGAAATATATAATTTTTCTTATTTGCATTACCATAATTTAAGTCCTGCATTTCCAAACCTCGAAGCCTTTTATTTTCAATCCAACCGATTCAGTGGACAAATACCAGTTTCAATCTCCAATGCATCCAACCTTGCATTATTTGGTATCTCAGCCAATATGTTTACAGGAAGAGTGCCTAGCCTGCCAGGGATGTCCAATCTGTTTCGGTTAGAAATGGATGCTAACAATCTTGGAAATAATGAGGAAGGTGACTTGGACTTTCTCTCTTCTCTGGTTAATTGCACCAATTTAGAGCGTTTGGATATCAGTGACAATAATTTTGGAGGAGTGCTACCTGAATCTCTCAGCAACCTCTCAGCAAAGCTCGAGGTCTTTTGTTGCAGCTTGCTTACTTGGATCTTTCTGATAAACAAATTATCTGGTGAGATTCCAAGCTCGATAGGAAACTGCATAAGTTTGGAAAGTTTGCATTTGGAAGGACATTTTTTGCGAGGGACCATTCCTGACGCTTGGAGTTCTTTTGAGAGGAGGAGTTTCTGCGTCTTGCGGAACTTAAACCTATCATTCAATGATTTAGAAGGTGCAGTACAGATAAAAGGAGTTTTCCAGAATTCAACTTCGTTTTCTATCATTGGAAATAAACGGCTATGTGGAGGTATATCTCAGTTAGTGTTGCCACCATGCATCTCCGACAAATCTAACAAAAAACCTAAGCAAGAAATATTTCCATGGCGAAAAGTACTTATCTCAATTGCCTGTGGGAGTGATATTGGAATTGTCTTCCTGTTGTGCTTTGTGCTTCTTTATCCATCAAGAAAATCATTGCGCTGTGTACTTTTTTATCTATCAAGAAAATCAAGAATGAAGTCAACTTCAGGATCATCATGGGAGGTTGCACTCTTGAAAGTTTCATACAGTGATCTCCTCAAAGCGACTAATGGGTTTTCTTCTCGGAATTTGATTGGTGCTGGTAGCTTCGGGTCAGTGTACAGGGGAATTCTCAATCAGGAAGAAAGAATTGTTGCAGTTAAAGTGCTTAATGTGCAAGGTTCAAGAGAGTTTTACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

41.85

Weight (kDa)

8.72

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024385)

Species	Orthologous Gene IDs
malus_domestica	MD01G1151600.v1.1 MD07G1219300.v1.1
prunus_persica	Prupe.1G427900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	2 cut(s)	467, 949
AcsI	RAATTY	3 cut(s)	673, 1018, 1059
AcuI	CTGAAG	1 cut(s)	921
AfaI	GTAC	4 cut(s)	651, 804, 897, 1052
AgsI	TTSAA	6 cut(s)	140, 174, 631, 678, 967, 1116
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	5 cut(s)	427, 447, 498, 1038, 1131
AluI	AGCT	5 cut(s)	427, 447, 498, 1038, 1131
AlwI	GGATC	2 cut(s)	467, 949
Ama87I	CYCGRG	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	3 cut(s)	673, 1018, 1059
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
Asp700I	GAANNNNTTC	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	891
AspS9I	GGNCC	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	323, 497
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	558
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BbsI	GAAGAC	1 cut(s)	835
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	1 cut(s)	880
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	194, 271, 756
BpiI	GAAGAC	1 cut(s)	835
Bpu10I	CCTNAGC	1 cut(s)	774
BsaJI	CCNNGG	2 cut(s)	248, 791
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	884
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	248, 791
BseGI	GGATG	3 cut(s)	185, 258, 286
BseMI	GCAATG	1 cut(s)	884
BseMII	CTCAG	4 cut(s)	225, 421, 432, 740
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	5 cut(s)	64, 402, 604, 607, 977
BseXI	GCAGC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	428
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	3 cut(s)	459, 941, 982
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	1 cut(s)	610
BspCNI	CTCAG	4 cut(s)	224, 420, 431, 739
BspLI	GGNNCC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	467, 949
BsrDI	GCAATG	1 cut(s)	884
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	248, 791
BssMI	GATC	3 cut(s)	459, 941, 982
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	7, 980
Bst6I	CTCTTC	2 cut(s)	226, 334
BstAUI	TGTACA	1 cut(s)	1050
BstC8I	GCNNGC	2 cut(s)	245, 449
BstDEI	CTNAG	5 cut(s)	211, 407, 418, 726, 774
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	185, 258, 286
BstHHI	GCGC	1 cut(s)	891
BstKTI	GATC	3 cut(s)	462, 944, 985
BstMBI	GATC	3 cut(s)	459, 941, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 1105
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	835
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	791
BtsCI	GGATG	3 cut(s)	185, 258, 286
BtsIMutI	CAGTG	5 cut(s)	12, 160, 376, 985, 1053
Cac8I	GCNNGC	2 cut(s)	245, 449
CfoI	GCGC	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	558
CseI	GACGC	2 cut(s)	578, 592
Csp6I	GTAC	4 cut(s)	650, 803, 896, 1051
CviAII	CATG	3 cut(s)	744, 792, 948
CviJI	RGCY	9 cut(s)	128, 215, 243, 427, 447, 498, 709, 1038, 1131
CviKI_1	RGCY	9 cut(s)	128, 215, 243, 427, 447, 498, 709, 1038, 1131
CviQI	GTAC	4 cut(s)	650, 803, 896, 1051
DdeI	CTNAG	5 cut(s)	211, 407, 418, 726, 774
DpnI	GATC	3 cut(s)	461, 943, 984
DpnII	GATC	3 cut(s)	459, 941, 982
Eam1104I	CTCTTC	2 cut(s)	226, 334
EarI	CTCTTC	2 cut(s)	226, 334
Eco130I	CCWWGG	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	921
Eco88I	CYCGRG	1 cut(s)	428
EcoRI	GAATTC	2 cut(s)	673, 1059
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	791
EcoT22I	ATGCAT	2 cut(s)	187, 749
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	3 cut(s)	747, 795, 951
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	3 cut(s)	743, 791, 947
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	3 cut(s)	172, 265, 293
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	890
GluI	GCNGC	1 cut(s)	445
HgaI	GACGC	2 cut(s)	578, 592
HhaI	GCGC	1 cut(s)	891
Hin1II	CATG	3 cut(s)	747, 795, 951
Hin6I	GCGC	1 cut(s)	889
HinP1I	GCGC	1 cut(s)	889
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HinfI	GANTC	3 cut(s)	150, 401, 490
HphI	GGTGA	2 cut(s)	323, 497
Hpy166II	GTNNAC	5 cut(s)	158, 225, 896, 933, 1051
Hpy188I	TCNGA	3 cut(s)	468, 754, 1017
Hpy188III	TCNNGA	9 cut(s)	566, 670, 876, 912, 921, 939, 964, 1070, 1116
Hpy8I	GTNNAC	5 cut(s)	158, 225, 896, 933, 1051
HpyAV	CCTTC	3 cut(s)	302, 533, 635
HpyCH4III	ACNGT	2 cut(s)	7, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 1105
HpyF3I	CTNAG	5 cut(s)	211, 407, 418, 726, 774
Hsp92II	CATG	3 cut(s)	747, 795, 951
HspAI	GCGC	1 cut(s)	889
Kzo9I	GATC	3 cut(s)	459, 941, 982
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	3 cut(s)	194, 271, 756
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	311, 371
MalI	GATC	3 cut(s)	461, 943, 984
MboI	GATC	3 cut(s)	459, 941, 982
MboII	GAAGA	5 cut(s)	243, 321, 835, 1002, 1085
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	459
MmeI	TCCRAC	3 cut(s)	168, 213, 777
Mph1103I	ATGCAT	2 cut(s)	187, 749
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	6 cut(s)	35, 101, 339, 617, 1092, 1101
MspA1I	CMGCKG	1 cut(s)	1131
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	244, 1105
NcoI	CCATGG	1 cut(s)	791
NdeII	GATC	3 cut(s)	459, 941, 982
NlaIII	CATG	3 cut(s)	747, 795, 951
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	2 cut(s)	311, 371
NsiI	ATGCAT	2 cut(s)	187, 749
PaeR7I	CTCGAG	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	3 cut(s)	150, 401, 490
PkrI	GCNGC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	558
PspXI	VCTCGAGB	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	1131
RsaI	GTAC	4 cut(s)	651, 804, 897, 1052
RsaNI	GTAC	4 cut(s)	650, 803, 896, 1051
SaqAI	TTAA	6 cut(s)	35, 101, 339, 617, 1092, 1101
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	3 cut(s)	459, 941, 982
Sau96I	GGNCC	1 cut(s)	558
ScaI	AGTACT	1 cut(s)	804
ScrFI	CCNGG	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	194, 271, 756
Sfr274I	CTCGAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	558
SlaI	CTCGAG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	2 cut(s)	7, 980
TaqI	TCGA	3 cut(s)	123, 429, 500
TatI	WGTACW	4 cut(s)	649, 802, 895, 1050
TfiI	GAWTC	3 cut(s)	150, 401, 490
Tru1I	TTAA	6 cut(s)	35, 101, 339, 617, 1092, 1101
Tru9I	TTAA	6 cut(s)	35, 101, 339, 617, 1092, 1101
TscAI	CASTG	5 cut(s)	12, 160, 376, 985, 1053
TseFI	GTSAC	2 cut(s)	311, 371
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	2 cut(s)	311, 371
TspDTI	ATGAA	3 cut(s)	10, 941, 963
TspRI	CASTG	5 cut(s)	12, 160, 376, 985, 1053
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	3 cut(s)	673, 1018, 1059
XhoI	CTCGAG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	804
Zsp2I	ATGCAT	2 cut(s)	187, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.