Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024385

Physical Location & Seq

Genomic Coordinates Reverse (-)

29678988 .. 29679581

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1219300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAATTTTCATTGGGTGAAAATTATTTGAATGGTACCATCCTTCCCTCCATATACAATCTCTCATCAATTAAAGTCATTCATATGTCTCAAAACAACCTTCATGGAAATCTTCCTCCTGGCTTGGGCCACACTATATTTCCAAACCTCGAAACCTTTATTTTCCACAGCAACCAATTCACTAGACCAATACCAGCTTCAATCTCCAAAGCCTCAAACCTTTTAGTATTTTCTATCGCAGCCAATAAGTTTATTGGGAAAATGCCTAGTCTGGCACGCCTGTCAAATTTGTATTCTTTTGAACTTCAGGAGAACAACCTTGGAAATAATGAGGAAGGTGACTTGGATTTCATCTCTTCTCTAGTTAATTGCACCAATTTAGAAGGTTTATCTATCGGCCTCAATAACTTCGGAGGAGTGCTGCCTGAAACTATCAGCAACCTCTCAACAAAGCTCACGAAAATATCTTTTCAAGAGAATCAGATACGCGGAAACATTCCCATCGGGGTTGGAAATCTTACCAACATGGAGAGACTAGGCTTTTTTGCAAATTTATTGGCAATAGGTAAACTGAATAAGCTTTATGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

21.6

Weight (kDa)

6.41

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024385)

Species	Orthologous Gene IDs
malus_domestica	MD01G1151600.v1.1 MD07G1219300.v1.1
prunus_persica	Prupe.1G427900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	1 cut(s)	489
AciI	CCGC	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	286, 550
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	4 cut(s)	31, 201, 302, 473
AjnI	CCWGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	3 cut(s)	197, 454, 580
AluI	AGCT	3 cut(s)	197, 454, 580
Alw26I	GTCTC	2 cut(s)	93, 526
AoxI	GGCC	2 cut(s)	127, 397
ApeKI	GCWGC	2 cut(s)	239, 421
ApoI	RAATTY	2 cut(s)	286, 550
Asp718I	GGTACC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	29, 350
BanI	GGYRCC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	251, 408
BccI	CCATC	2 cut(s)	47, 509
BciT130I	CCWGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	93, 526
BfaI	CTAG	4 cut(s)	183, 267, 362, 536
BisI	GCNGC	2 cut(s)	240, 422
BlsI	GCNGC	2 cut(s)	241, 423
Bme1390I	CCNGG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	251, 408
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	129, 399
BshNI	GGYRCC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	93, 526
BsnI	GGCC	2 cut(s)	129, 399
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	2 cut(s)	129, 399
BspFNI	CGCG	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	590
BspLI	GGNNCC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	489
BstMAI	GTCTC	2 cut(s)	93, 526
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	251, 408
BsuRI	GGCC	2 cut(s)	129, 399
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	3 cut(s)	104, 526, 591
CviJI	RGCY	9 cut(s)	123, 129, 197, 212, 242, 399, 454, 540, 580
CviKI_1	RGCY	9 cut(s)	123, 129, 197, 212, 242, 399, 454, 540, 580
CviQI	GTAC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	107, 529, 594
FaiI	YATR	9 cut(s)	53, 55, 84, 86, 105, 137, 527, 585, 592
FatI	CATG	3 cut(s)	103, 525, 590
FauNDI	CATATG	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	240, 422
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	240, 422
FspBI	CTAG	4 cut(s)	183, 267, 362, 536
GluI	GCNGC	2 cut(s)	240, 422
HaeIII	GGCC	2 cut(s)	129, 399
Hin1II	CATG	3 cut(s)	107, 529, 594
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	478, 587
HphI	GGTGA	2 cut(s)	29, 350
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	2 cut(s)	413, 483
Hpy188III	TCNNGA	4 cut(s)	308, 457, 473, 591
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	4 cut(s)	53, 110, 329, 377
HpyCH4V	TGCA	3 cut(s)	4, 372, 548
Hsp92II	CATG	3 cut(s)	107, 529, 594
KpnI	GGTACC	1 cut(s)	39
LpnPI	CCDG	7 cut(s)	105, 132, 207, 257, 293, 293, 438
Lsp1109I	GCAGC	2 cut(s)	251, 408
MaeI	CTAG	4 cut(s)	183, 267, 362, 536
MaeIII	GTNAC	1 cut(s)	338
MboII	GAAGA	2 cut(s)	104, 348
MluCI	AATT	8 cut(s)	5, 22, 69, 176, 286, 367, 376, 550
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	8 cut(s)	58, 126, 158, 223, 325, 407, 410, 452
MseI	TTAA	2 cut(s)	72, 366
MslI	CAYNNNNRTG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	489
NdeI	CATATG	1 cut(s)	84
NlaIII	CATG	3 cut(s)	107, 529, 594
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	241, 423
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	72, 366
SatI	GCNGC	2 cut(s)	240, 422
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	8 cut(s)	5, 22, 69, 176, 286, 367, 376, 550
SsiI	CCGC	1 cut(s)	489
SspMI	CTAG	4 cut(s)	183, 267, 362, 536
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	319
TaqI	TCGA	1 cut(s)	150
TasI	AATT	8 cut(s)	5, 22, 69, 176, 286, 367, 376, 550
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	72, 366
Tru9I	TTAA	2 cut(s)	72, 366
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	239, 421
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	71, 92, 340
XapI	RAATTY	2 cut(s)	286, 550
XspI	CTAG	4 cut(s)	183, 267, 362, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.