MD01G1178100.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0028623
Physical Location & Seq
Forward (+)
27845860 .. 27846995
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1178100.v1.1.491

Sequence Viewer

Length: 864 bp
ATGGCGAGGCAAAAGCAAAACGATGGAGCATACATCAGGAAAGGGCCATGGACTGCTGAGGAAGATGAGGTGCTCATAAGTCATGTGAAGAGAAATGGTCCTAGAGACTGGAGCTCCATTCGATCCAAAGGACTCTTGCCGCGAACTGGAAAATCATGCCGGCTCAGATGGGTTAATAAGCTCCGACCGAACTTGAAGACTGGATGCAAGTTTTCTGGAGAGGAGGAGAGGATGGTGATACAACTGCAAGCGCAATTCGGGAACAAGTGGGCGAAAATTGCGACGTATCTGCAAGGCAGAACGGACAATGATGTAAAGAATTTCTGGAGCGCTCGGCGAAAGAGGTTTGAGAGGATTCTGCAGAAATCGACATCCTCAAACTCCCAAAAAAACAAGGGGAAGAGCCTTGTGCATCATGAATTTCCAGTGGATAAGGTTTCTTCTCATCCAAGCAATTGCTTTTTGAATTCTGAAGAGTTGGGAATGGTGGATCTACCGGATTTGGTGAAAGCGAACCAACTGCTGAATGTGGAAGCAGAGCAGCAGCCCATGCTTGAGGCCACGCCGATTAATATGATCCCGTCTTCTGATTTCCCACCACACTTATCTTTGTCTCAGCTTCCTCAGCCCCAACTAGACCTCTCATTTTTATCAGGATGCAAAGAAATTGACCAGGACCCTATCGTTCTGAACTTGCTGGACGTGTTCGGGCAGGATATCCCACCTCTTGGACTGGAGGAGAATGTTCAAGGTAATAAGTTAGGAGAGCTTAAAGACCTTTCGACCCCTGACATTTTCTTCGATGAATTCCCACCTGAGATGCTTGATTATCTCGAAACTCTTACAAGCTCGTCAGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.57

Weight (kDa)

6.03

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 59 8.4e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 67 1.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 109 2.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028623)

Species Orthologous Gene IDs
malus_domestica MD01G1178100.v1.1
prunus_persica Prupe.2G273900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 728
AccII CGCG 1 cut(s) 142
AciI CCGC 1 cut(s) 140
AclWI GGATC 3 cut(s) 117, 498, 571
AcsI RAATTY 4 cut(s) 319, 419, 466, 806
AcuI CTGAAG 1 cut(s) 492
AfeI AGCGCT 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 146, 728
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 3 cut(s) 196, 466, 749
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 5 cut(s) 114, 181, 619, 769, 849
AluI AGCT 5 cut(s) 114, 181, 619, 769, 849
Alw21I GWGCWC 2 cut(s) 75, 116
Alw26I GTCTC 2 cut(s) 99, 618
AlwI GGATC 3 cut(s) 117, 498, 571
Aor51HI AGCGCT 1 cut(s) 331
AoxI GGCC 2 cut(s) 44, 558
ApeKI GCWGC 2 cut(s) 541, 544
ApoI RAATTY 4 cut(s) 319, 419, 466, 806
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AseI ATTAAT 1 cut(s) 570
AspLEI GCGC 2 cut(s) 253, 332
AspS9I GGNCC 3 cut(s) 44, 98, 676
AsuHPI GGTGA 2 cut(s) 247, 517
AvaII GGWCC 2 cut(s) 98, 676
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 203, 576
Bbv12I GWGCWC 2 cut(s) 75, 116
BbvCI CCTCAGC 2 cut(s) 57, 624
BbvI GCAGC 2 cut(s) 553, 556
BccI CCATC 3 cut(s) 17, 162, 226
BcgI CGANNNNNNTGC 4 cut(s) 271, 305, 502, 536
BciT130I CCWGG 1 cut(s) 674
BcoDI GTCTC 2 cut(s) 99, 618
BfaI CTAG 2 cut(s) 102, 635
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 3 cut(s) 140, 542, 545
BlsI GCNGC 3 cut(s) 141, 543, 546
Bme1390I CCNGG 1 cut(s) 674
Bme18I GGWCC 2 cut(s) 98, 676
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 44, 98, 676
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 674
BmsI GCATC 4 cut(s) 194, 421, 647, 810
BpiI GAAGAC 2 cut(s) 203, 576
BpmI CTGGAG 4 cut(s) 130, 237, 346, 755
Bpu10I CCTNAGC 2 cut(s) 57, 624
BpuEI CTTGAG 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 728
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 5 cut(s) 113, 151, 205, 425, 738
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 5 cut(s) 209, 237, 371, 445, 662
BseLI CCNNNNNNNGG 2 cut(s) 146, 728
BseMII CTCAG 5 cut(s) 48, 178, 629, 638, 807
BseNI ACTGG 5 cut(s) 113, 151, 205, 425, 738
BseRI GAGGAG 3 cut(s) 236, 239, 752
BseXI GCAGC 2 cut(s) 553, 556
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 46, 560
BsiEI CGRYCG 1 cut(s) 188
BsiHKAI GWGCWC 2 cut(s) 75, 116
BsiSI CCGG 2 cut(s) 160, 497
BslI CCNNNNNNNGG 2 cut(s) 146, 728
BsmAI GTCTC 2 cut(s) 99, 618
BsnI GGCC 2 cut(s) 46, 560
Bsp1286I GDGCHC 2 cut(s) 75, 116
Bsp143I GATC 3 cut(s) 122, 490, 576
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 46, 560
BspCNI CTCAG 5 cut(s) 49, 177, 628, 637, 808
BspFNI CGCG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 1 cut(s) 363
BspPI GGATC 3 cut(s) 117, 498, 571
BspQI GCTCTTC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 5 cut(s) 113, 151, 205, 425, 738
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 122, 490, 576
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 674
Bst6I CTCTTC 3 cut(s) 83, 395, 468
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 161, 249
BstDEI CTNAG 5 cut(s) 57, 164, 615, 624, 816
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 209, 237, 371, 445, 662
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 253, 332
BstKTI GATC 3 cut(s) 125, 493, 579
BstMAI GTCTC 2 cut(s) 99, 618
BstMBI GATC 3 cut(s) 122, 490, 576
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 3 cut(s) 278, 550, 625
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 1 cut(s) 359
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 553, 556
BstV2I GAAGAC 2 cut(s) 203, 576
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 2 cut(s) 46, 560
BtgI CCRYGG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 5 cut(s) 209, 237, 371, 445, 662
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 161, 249
CciI TCATGA 1 cut(s) 415
CfoI GCGC 2 cut(s) 253, 332
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 44, 98, 676
CviAII CATG 5 cut(s) 48, 83, 156, 416, 550
DdeI CTNAG 5 cut(s) 57, 164, 615, 624, 816
DpnI GATC 3 cut(s) 124, 492, 578
DpnII GATC 3 cut(s) 122, 490, 576
Eam1104I CTCTTC 3 cut(s) 83, 395, 468
EarI CTCTTC 3 cut(s) 83, 395, 468
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 98, 676
Eco47III AGCGCT 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 676
EcoRI GAATTC 2 cut(s) 466, 806
EcoRII CCWGG 1 cut(s) 672
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 51, 86, 159, 419, 553
FaiI YATR 9 cut(s) 31, 49, 77, 84, 157, 417, 551, 575, 862
FatI CATG 5 cut(s) 47, 82, 155, 415, 549
Fnu4HI GCNGC 3 cut(s) 140, 542, 545
FokI GGATG 5 cut(s) 216, 244, 358, 432, 669
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 140, 542, 545
FspBI CTAG 2 cut(s) 102, 635
GlaI GCGC 2 cut(s) 252, 331
GluI GCNGC 3 cut(s) 140, 542, 545
GsuI CTGGAG 4 cut(s) 130, 237, 346, 755
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 46, 560
HapII CCGG 2 cut(s) 160, 497
HhaI GCGC 2 cut(s) 253, 332
Hin1II CATG 5 cut(s) 51, 86, 159, 419, 553
Hin6I GCGC 2 cut(s) 251, 330
HinP1I GCGC 2 cut(s) 251, 330
HinfI GANTC 2 cut(s) 132, 355
HpaII CCGG 2 cut(s) 160, 497
HphI GGTGA 2 cut(s) 247, 517
Hpy188I TCNGA 6 cut(s) 167, 185, 472, 589, 690, 856
Hpy188III TCNNGA 7 cut(s) 37, 216, 259, 325, 416, 654, 833
Hpy99I CGWCG 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 284, 702
HpyCH4V TGCA 6 cut(s) 207, 247, 292, 361, 412, 660
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 550, 625
HpyF3I CTNAG 5 cut(s) 57, 164, 615, 624, 816
HpySE526I ACGT 2 cut(s) 284, 702
Hsp92II CATG 5 cut(s) 51, 86, 159, 419, 553
HspAI GCGC 2 cut(s) 251, 330
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Kzo9I GATC 3 cut(s) 122, 490, 576
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 5 cut(s) 26, 111, 119, 186, 327
Lsp1109I GCAGC 2 cut(s) 553, 556
LweI GCATC 4 cut(s) 194, 421, 647, 810
MaeI CTAG 2 cut(s) 102, 635
MaeII ACGT 2 cut(s) 284, 702
MalI GATC 3 cut(s) 124, 492, 578
MboI GATC 3 cut(s) 122, 490, 576
MboII GAAGA 8 cut(s) 74, 100, 208, 412, 432, 485, 576, 790
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 2 cut(s) 75, 116
MluCI AATT 8 cut(s) 254, 276, 319, 419, 454, 466, 666, 806
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 159
MseI TTAA 3 cut(s) 174, 570, 771
MspI CCGG 2 cut(s) 160, 497
MspR9I CCNGG 1 cut(s) 674
MunI CAATTG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 674
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 278, 550, 625
NaeI GCCGGC 1 cut(s) 161
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 122, 490, 576
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 5 cut(s) 51, 86, 159, 419, 553
NlaIV GGNNCC 1 cut(s) 678
NmeAIII GCCGAG 1 cut(s) 313
PagI TCATGA 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 3 cut(s) 141, 543, 546
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 676
PshBI ATTAAT 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 3 cut(s) 44, 98, 676
PspPPI RGGWCCY 1 cut(s) 676
PstI CTGCAG 1 cut(s) 363
PsuI RGATCY 1 cut(s) 490
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 174, 570, 771
SatI GCNGC 3 cut(s) 140, 542, 545
Sau3AI GATC 3 cut(s) 122, 490, 576
Sau96I GGNCC 3 cut(s) 44, 98, 676
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 2 cut(s) 75, 116
SfaNI GCATC 4 cut(s) 194, 421, 647, 810
SfcI CTRYAG 1 cut(s) 359
SinI GGWCC 2 cut(s) 98, 676
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 8 cut(s) 254, 276, 319, 419, 454, 466, 666, 806
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 102, 635
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 672
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 2 cut(s) 287, 705
TaqI TCGA 5 cut(s) 121, 368, 782, 801, 834
TaqII GACCGA 1 cut(s) 202
TasI AATT 8 cut(s) 254, 276, 319, 419, 454, 466, 666, 806
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 174, 570, 771
Tru9I TTAA 3 cut(s) 174, 570, 771
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 541, 544
TspDTI ATGAA 2 cut(s) 432, 819
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 98, 676
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 4 cut(s) 319, 419, 466, 806
XspI CTAG 2 cut(s) 102, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.