Prupe.2G273900_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0028623
Physical Location & Seq
Forward (+)
27651295 .. 27652491
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G273900.1

Sequence Viewer

Length: 912 bp
ATGGAGAGGACAAATGCATACGTTAAGAAAGGGCCATGGACTGCTGAAGAAGATGAGGTACTGATAAGTCATGTGAATAAATGTGGTCCAAGAGATTGGAGCTCCATTCGATCCAAGGGCCTTTTGCCACGAACTGGAAAATCATGTCGTCTCAGATGGGTTAACAAGCTTAGACCCAACTTGAAGACTGGAAGCAAGTTTTCAGCAGAGGAAGAGAGGATGGTGATACAACTGCAAGCACAATTCGGGAACAAGTGGGCAAAAATCGCAACGTATTTGCCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCACGAGACGGAAGCGGTTCGAGAGGATTTTGCAGAAATCAACATCACTACAGTCCCAGAACAACAAAGGAAAGAGCCCTCTTGTCCGTCATGAATTACCAGAGGTTAAGGTTCCTCCTGATCCATGCAGTTCTGCTATTGAGGAGGGCACATCATGCTGCAACTATGAAACCCACAATTGCTTTTCAAATTCTCAAGAGTTCAGAATGGTGCCCCTGCCAGATTTGGTAAAACCAAACCTGCAAAACGTGGAAGCAGAGCAGCCAATACTTGAGGCCACGCCCCTTAATATGATCTCGCCGATTGATTCCCCACCACACTACTCTCTGTCTCAGCTCCCTCAGCCCCAACTGGACCTTCCATTTTTGTCAGAATGCAAGGAACTTGACCAAGACCCTATGGCTCCCGACTCGTTGGACATGTTCGGGCAGGAGGTTACTGAATGTGAAAGTGGCCAGAAGTTCTTTAAGGAGAATGCTGCAAGTACCAAGCTAGGAGAAGTAAAAGGCCTTTCGATCCCCAACATTGTTTTCGATGATTTCCCACCGGAGATGCTTGATTATCTTGAAACACTTACAAGCTCGTCGGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

34.35

Weight (kDa)

5.6

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028623)

Species Orthologous Gene IDs
malus_domestica MD01G1178100.v1.1
prunus_persica Prupe.2G273900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 910
Acc36I ACCTGC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 1 cut(s) 331
AclWI GGATC 3 cut(s) 105, 431, 826
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 2 cut(s) 307, 505
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 2 cut(s) 60, 802
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 3 cut(s) 184, 504, 884
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 4 cut(s) 657, 689, 830, 862
AluBI AGCT 5 cut(s) 102, 169, 652, 808, 897
AluI AGCT 5 cut(s) 102, 169, 652, 808, 897
Alw21I GWGCWC 2 cut(s) 104, 320
Alw26I GTCTC 3 cut(s) 155, 316, 651
AlwI GGATC 3 cut(s) 105, 431, 826
AoxI GGCC 5 cut(s) 32, 118, 591, 769, 823
ApeKI GCWGC 3 cut(s) 474, 577, 794
ApoI RAATTY 2 cut(s) 307, 505
Asp700I GAANNNNTTC 2 cut(s) 308, 332
AspS9I GGNCC 4 cut(s) 32, 86, 118, 670
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 2 cut(s) 86, 670
BaeGI GKGCMC 2 cut(s) 467, 531
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 2 cut(s) 104, 395
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 2 cut(s) 104, 320
BbvCI CCTCAGC 1 cut(s) 657
BbvI GCAGC 3 cut(s) 461, 589, 781
BccI CCATC 2 cut(s) 150, 214
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 155, 316, 651
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 564
BisI GCNGC 3 cut(s) 475, 578, 795
BlsI GCNGC 3 cut(s) 476, 579, 796
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 2 cut(s) 86, 670
BmgT120I GGNCC 4 cut(s) 32, 86, 118, 670
BmiI GGNNCC 3 cut(s) 429, 528, 720
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 495, 608
BsaJI CCNNGG 3 cut(s) 35, 114, 281
BsaWI WCCGGW 1 cut(s) 862
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 139, 193, 672
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 35, 114, 281
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 3 cut(s) 166, 662, 671
BseNI ACTGG 3 cut(s) 139, 193, 672
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 2 cut(s) 467, 531
BseXI GCAGC 3 cut(s) 461, 589, 781
BshFI GGCC 5 cut(s) 34, 120, 593, 771, 825
BshNI GGYRCC 1 cut(s) 526
BsiHKAI GWGCWC 2 cut(s) 104, 320
BsiSI CCGG 1 cut(s) 863
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 3 cut(s) 155, 316, 651
BsmBI CGTCTC 2 cut(s) 155, 316
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 2 cut(s) 695, 796
BsnI GGCC 5 cut(s) 34, 120, 593, 771, 825
Bsp1286I GDGCHC 5 cut(s) 104, 320, 395, 467, 531
Bsp143I GATC 4 cut(s) 110, 436, 609, 831
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 331
BspANI GGCC 5 cut(s) 34, 120, 593, 771, 825
BspCNI CTCAG 3 cut(s) 165, 661, 670
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 429, 528, 720
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 3 cut(s) 105, 431, 826
BspT107I GGYRCC 1 cut(s) 526
BsrI ACTGG 3 cut(s) 139, 193, 672
BssECI CCNNGG 3 cut(s) 35, 114, 281
BssMI GATC 4 cut(s) 110, 436, 609, 831
BssSI CACGAG 1 cut(s) 319
BssT1I CCWWGG 2 cut(s) 35, 114
Bst2BI CACGAG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 152, 170, 648, 657
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 4 cut(s) 113, 439, 612, 834
BstMAI GTCTC 3 cut(s) 155, 316, 651
BstMBI GATC 4 cut(s) 110, 436, 609, 831
BstMWI GCNNNNNNNGC 3 cut(s) 266, 471, 658
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 365
BstSLI GKGCMC 2 cut(s) 467, 531
BstV1I GCAGC 3 cut(s) 461, 589, 781
BstV2I GAAGAC 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 5 cut(s) 34, 120, 593, 771, 825
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 237
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 4 cut(s) 32, 86, 118, 670
Csp6I GTAC 2 cut(s) 59, 801
CviAII CATG 7 cut(s) 36, 71, 144, 407, 441, 471, 736
CviQI GTAC 2 cut(s) 59, 801
DdeI CTNAG 4 cut(s) 152, 170, 648, 657
DpnI GATC 4 cut(s) 112, 438, 611, 833
DpnII GATC 4 cut(s) 110, 436, 609, 831
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 35, 114
Eco147I AGGCCT 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 104, 395
Eco47I GGWCC 2 cut(s) 86, 670
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 35, 114
EcoT22I ATGCAT 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 104, 395
ErhI CCWWGG 2 cut(s) 35, 114
Esp3I CGTCTC 2 cut(s) 155, 316
FaeI CATG 7 cut(s) 39, 74, 147, 410, 444, 474, 739
FaqI GGGAC 1 cut(s) 355
FatI CATG 7 cut(s) 35, 70, 143, 406, 440, 470, 735
Fnu4HI GCNGC 3 cut(s) 475, 578, 795
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 2 cut(s) 104, 395
Fsp4HI GCNGC 3 cut(s) 475, 578, 795
FspBI CTAG 1 cut(s) 809
GluI GCNGC 3 cut(s) 475, 578, 795
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 5 cut(s) 34, 120, 593, 771, 825
HapII CCGG 1 cut(s) 863
Hin1II CATG 7 cut(s) 39, 74, 147, 410, 444, 474, 739
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 623, 725
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 863
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 155, 521, 688, 904
Hpy188III TCNNGA 8 cut(s) 247, 313, 337, 407, 434, 512, 722, 881
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 904
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 3 cut(s) 21, 272, 564
HpyCH4V TGCA 8 cut(s) 17, 235, 349, 444, 477, 559, 693, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 471, 658
HpyF3I CTNAG 4 cut(s) 152, 170, 648, 657
HpySE526I ACGT 3 cut(s) 21, 272, 564
Hsp92II CATG 7 cut(s) 39, 74, 147, 410, 444, 474, 739
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 4 cut(s) 110, 436, 609, 831
LmnI GCTCC 5 cut(s) 99, 107, 315, 657, 724
Lsp1109I GCAGC 3 cut(s) 461, 589, 781
LweI GCATC 1 cut(s) 858
MaeI CTAG 1 cut(s) 809
MaeII ACGT 3 cut(s) 21, 272, 564
MaeIII GTNAC 1 cut(s) 751
MalI GATC 4 cut(s) 112, 438, 611, 833
MboI GATC 4 cut(s) 110, 436, 609, 831
MboII GAAGA 4 cut(s) 59, 62, 196, 224
MfeI CAATTG 1 cut(s) 493
MhlI GDGCHC 5 cut(s) 104, 320, 395, 467, 531
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 5 cut(s) 242, 307, 410, 493, 505
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 2 cut(s) 711, 882
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 19
MroXI GAANNNNTTC 2 cut(s) 308, 332
MscI TGGCCA 1 cut(s) 771
MseI TTAA 5 cut(s) 24, 162, 423, 603, 783
Msp20I TGGCCA 1 cut(s) 771
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 2 cut(s) 695, 796
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 266, 471, 658
NcoI CCATGG 1 cut(s) 35
NdeII GATC 4 cut(s) 110, 436, 609, 831
NlaIII CATG 7 cut(s) 39, 74, 147, 410, 444, 474, 739
NlaIV GGNNCC 3 cut(s) 429, 528, 720
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 739
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 825
PciI ACATGT 1 cut(s) 735
PctI GAATGC 2 cut(s) 695, 796
PdmI GAANNNNTTC 2 cut(s) 308, 332
PfeI GAWTC 1 cut(s) 623
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 3 cut(s) 476, 579, 796
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PscI ACATGT 1 cut(s) 735
PsiI TTATAA 1 cut(s) 910
Psp124BI GAGCTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 429, 528, 720
PspPI GGNCC 4 cut(s) 32, 86, 118, 670
RsaI GTAC 2 cut(s) 60, 802
RsaNI GTAC 2 cut(s) 59, 801
SacI GAGCTC 1 cut(s) 104
SaqAI TTAA 5 cut(s) 24, 162, 423, 603, 783
SatI GCNGC 3 cut(s) 475, 578, 795
Sau3AI GATC 4 cut(s) 110, 436, 609, 831
Sau96I GGNCC 4 cut(s) 32, 86, 118, 670
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 5 cut(s) 104, 320, 395, 467, 531
SfaNI GCATC 1 cut(s) 858
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 86, 670
SmlI CTYRAG 2 cut(s) 510, 587
SmoI CTYRAG 2 cut(s) 510, 587
Sse9I AATT 5 cut(s) 242, 307, 410, 493, 505
SseBI AGGCCT 1 cut(s) 825
SsiI CCGC 1 cut(s) 331
SspMI CTAG 1 cut(s) 809
SstI GAGCTC 1 cut(s) 104
StuI AGGCCT 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 35, 114
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 3 cut(s) 24, 275, 567
TaqI TCGA 4 cut(s) 109, 336, 830, 849
TasI AATT 5 cut(s) 242, 307, 410, 493, 505
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 5 cut(s) 24, 162, 423, 603, 783
Tru9I TTAA 5 cut(s) 24, 162, 423, 603, 783
TseI GCWGC 3 cut(s) 474, 577, 794
TspDTI ATGAA 2 cut(s) 423, 498
TspGWI ACGGA 2 cut(s) 340, 392
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 86, 670
XapI RAATTY 2 cut(s) 307, 505
XceI RCATGY 1 cut(s) 739
XmnI GAANNNNTTC 2 cut(s) 308, 332
XspI CTAG 1 cut(s) 809
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.