MD01G1189800.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0028612
Physical Location & Seq
Forward (+)
28883871 .. 28884693
823 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1189800.v1.1.491

Sequence Viewer

Length: 261 bp
ATGGGGTGCTTTTCAGCCTTTCCAAAGGAAAAAAAAAGCATTGGAAAGACAAATGGACCGGTGGCTAAAGAACCTTCTTCGGCTCCGGCTACTAGTTCCACCACGGACACCGTGAGTGGAGACAGTGGTGGGAACAACAAGAACAAAGAGAAAGATGGACAGGGAAACGAAGGCGAAACTGGTCACCGGAGTTGCACCGCCGGTTCTTGCATGCTCTTCTCTTCAACAACTTGGTGGTTCACATGGACCGGCCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

87

Amino Acids

8.91

Weight (kDa)

7.71

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028612)

Species Orthologous Gene IDs
malus_domestica MD01G1189800.v1.1 MD05G1235100.v1.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 1 cut(s) 225
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 1 cut(s) 250
AsiGI ACCGGT 1 cut(s) 58
AspS9I GGNCC 3 cut(s) 56, 246, 251
AsuHPI GGTGA 1 cut(s) 176
AvaII GGWCC 2 cut(s) 56, 246
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 56, 246
BmgT120I GGNCC 3 cut(s) 56, 246, 251
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 102, 253
BsaWI WCCGGW 2 cut(s) 58, 186
Bse118I RCCGGY 3 cut(s) 58, 200, 248
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 102, 253
BseNI ACTGG 1 cut(s) 184
BshFI GGCC 1 cut(s) 252
BshTI ACCGGT 1 cut(s) 58
BsiSI CCGG 5 cut(s) 59, 86, 187, 201, 249
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 252
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 221
BsrFI RCCGGY 3 cut(s) 58, 200, 248
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 3 cut(s) 58, 200, 248
BssECI CCNNGG 2 cut(s) 102, 253
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 112, 125
Bst6I CTCTTC 2 cut(s) 221, 226
BstC8I GCNNGC 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 214
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 212
Cfr10I RCCGGY 3 cut(s) 58, 200, 248
Cfr13I GGNCC 3 cut(s) 56, 246, 251
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 2 cut(s) 211, 243
CviJI RGCY 5 cut(s) 17, 65, 83, 89, 252
CviKI_1 RGCY 5 cut(s) 17, 65, 83, 89, 252
Eam1104I CTCTTC 2 cut(s) 221, 226
EarI CTCTTC 2 cut(s) 221, 226
Eco47I GGWCC 2 cut(s) 56, 246
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 2 cut(s) 214, 246
FaiI YATR 2 cut(s) 212, 244
FatI CATG 2 cut(s) 210, 242
FspBI CTAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 252
HapII CCGG 5 cut(s) 59, 86, 187, 201, 249
Hin1II CATG 2 cut(s) 214, 246
HpaII CCGG 5 cut(s) 59, 86, 187, 201, 249
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 84, 164
HpyCH4III ACNGT 2 cut(s) 112, 125
HpyCH4V TGCA 2 cut(s) 195, 210
Hsp92II CATG 2 cut(s) 214, 246
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 72, 99, 146, 165, 200, 214, 240
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 3 cut(s) 69, 208, 213
MspI CCGG 5 cut(s) 59, 86, 187, 201, 249
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NlaIII CATG 2 cut(s) 214, 246
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 214
PaeI GCATGC 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 253
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 56, 246, 251
SapI GCTCTTC 1 cut(s) 221
Sau96I GGNCC 3 cut(s) 56, 246, 251
ScrFI CCNGG 1 cut(s) 255
SetI ASST 1 cut(s) 76
SinI GGWCC 2 cut(s) 56, 246
SpeI ACTAGT 1 cut(s) 92
SphI GCATGC 1 cut(s) 214
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 112, 125
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 56, 246
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.