Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0028621

Physical Location & Seq

Genomic Coordinates Forward (+)

30238078 .. 30238547

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTGCAGTTTATACCTTACTCGTTTGCAGGGAAAGAAGCTAGCCATGTTGGAATTAGCACTTGTGACCACAGGAGGAGGAAGGAGCTCGAACAGAAACGTGTCGTGTTAGCTTTGATTGTTGCACTTGTTGAGGCTCCAGCAGGTTCGAGGCACGAGCGAAACCATGGTCAATCACATCTTCCCCTTATGGTAAACCAGCGGGCAAATGTCACGAGATGGGAGATGCGAACGAAACCTTTCGTGAGGACTCTTGAGTTTCTATGGCAGGAGGGACATAATCGAAACATTTGCTGGTGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010109 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

102

Amino Acids

11.82

Weight (kDa)

9.69

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028621)

Species	Orthologous Gene IDs
malus_domestica	MD01G1206900.v1.1
pyrus_communis	pycom01g21730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AciI	CCGC	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	100
AluBI	AGCT	3 cut(s)	41, 88, 113
AluI	AGCT	3 cut(s)	41, 88, 113
Alw21I	GWGCWC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
Asp700I	GAANNNNTTC	1 cut(s)	239
AsuNHI	GCTAGC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	90
BauI	CACGAG	2 cut(s)	155, 214
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	1 cut(s)	213
BcgI	CGANNNNNNTGC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	166
BssSI	CACGAG	2 cut(s)	155, 214
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	2 cut(s)	155, 214
BstC8I	GCNNGC	2 cut(s)	43, 204
BstDSI	CCRYGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	43, 204
CviAII	CATG	2 cut(s)	47, 167
CviJI	RGCY	5 cut(s)	41, 45, 88, 113, 137
CviKI_1	RGCY	5 cut(s)	41, 45, 88, 113, 137
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	50, 170
FaiI	YATR	6 cut(s)	14, 48, 168, 191, 265, 279
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	46, 166
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	123
Hin1II	CATG	2 cut(s)	50, 170
HinfI	GANTC	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	214, 244, 254
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	7, 29, 125
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	50, 170
LmnI	GCTCC	2 cut(s)	85, 142
LpnPI	CCDG	7 cut(s)	15, 58, 129, 153, 212, 254, 280
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	65, 211
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	6 cut(s)	69, 72, 127, 144, 240, 265
MroXI	GAANNNNTTC	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	166
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	50, 170
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	65, 211
PdmI	GAANNNNTTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	90
SatI	GCNGC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	7 cut(s)	19, 43, 90, 103, 115, 148, 241
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	90, 149, 283
TasI	AATT	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	65, 211
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	65, 211
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.