pycom01g21730

Proline--tRNA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
19647306 .. 19647820
515 bp
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UTR
Exon/CDS
Intron
pycom01g21730.2

Sequence Viewer

Length: 252 bp
ATGTTGGAATTAGCACTTGTGACCATAGGAGGAGGAAGGAGCTCGAAGAGAAACGTGTCGTATGTATTTCCATCAGTAACTGTTGTTTGGATTCATAGTTACCATGATCTTCCCCTTATGGTAAACCAGGTCACGAGATGGGAGTTGCGAACGAAACCTTTCGTGAGGACTCTTGGGTTTCTATGGCAGGAGGGACATCACATAATCGAAACATATGCTGGTGCTGTTAGGACCTATACGAAAAGGATATGA

Protein Analysis

84

Amino Acids

9.63

Weight (kDa)

10.1

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028621)

Species Orthologous Gene IDs
malus_domestica MD01G1206900.v1.1
pyrus_communis pycom01g21730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 54
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw21I GWGCWC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 231
AvaII GGWCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 44
BauI CACGAG 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 2 cut(s) 79, 132
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 106
BssMI GATC 1 cut(s) 106
BssSI CACGAG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 41
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 231
CsiI ACCWGGT 1 cut(s) 126
CviAII CATG 1 cut(s) 104
CviJI RGCY 1 cut(s) 42
CviKI_1 RGCY 1 cut(s) 42
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 107
FaqI GGGAC 1 cut(s) 207
FatI CATG 1 cut(s) 103
FauNDI CATATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 91, 169
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 133, 163
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 113, 140, 173, 204
MabI ACCWGGT 1 cut(s) 126
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 4 cut(s) 19, 76, 98, 130
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 2 cut(s) 58, 101
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 4 cut(s) 23, 26, 159, 184
MroXI GAANNNNTTC 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 214
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 2 cut(s) 19, 130
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 91
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 231
PspPPI RGGWCCY 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 44
SetI ASST 5 cut(s) 44, 57, 132, 160, 236
SexAI ACCWGGT 1 cut(s) 126
SinI GGWCC 1 cut(s) 231
Sse9I AATT 1 cut(s) 8
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 44, 207
TasI AATT 1 cut(s) 8
TfiI GAWTC 1 cut(s) 91
TseFI GTSAC 2 cut(s) 19, 130
Tsp45I GTSAC 2 cut(s) 19, 130
TspDTI ATGAA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.