MD01G1217500.v1.1

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0023556
Physical Location & Seq
Forward (+)
31014995 .. 31015228
234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1217500.v1.1.491

Sequence Viewer

Length: 234 bp
ATGGAAGGCACTCCAGTTCTGCAGATCTCAAGGTTGGTGACTTCTGTTGCGAAGAACTTCTCACATGGTTTGTTGATCCCAGCGCATCATTGTTTAATCTTCCCAACTCCACGAACTGCCCGTGCTTGTTGTGAAGTTGAAGCGTTTACTTTAAAAGCAGAGGACCTGAAGTTTGTAGCCAGCCAGTTCAGAAGGTCTGCTGGCAAGCGGGCACAGCACACATTTAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

78

Amino Acids

8.64

Weight (kDa)

10.07

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023556)

Species Orthologous Gene IDs
malus_domestica MD01G1217500.v1.1
rosa_multiflora Rmu_sc0000367.1_g000150 Rmu_sc0022251.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 140
AlwI GGATC 1 cut(s) 70
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 14, 184
BseNI ACTGG 2 cut(s) 14, 184
BseSI GKGCMC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 24, 75
BspACI CCGC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 70
BsrI ACTGG 2 cut(s) 14, 184
BssMI GATC 2 cut(s) 24, 75
BstC8I GCNNGC 4 cut(s) 181, 202, 206, 210
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 27, 78
BstMBI GATC 2 cut(s) 24, 75
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
Cac8I GCNNGC 4 cut(s) 181, 202, 206, 210
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 163
CviAII CATG 1 cut(s) 65
CviJI RGCY 2 cut(s) 179, 183
CviKI_1 RGCY 2 cut(s) 179, 183
DpnI GATC 2 cut(s) 26, 77
DpnII GATC 2 cut(s) 24, 75
DraI TTTAAA 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 163
FaeI CATG 1 cut(s) 68
FaiI YATR 1 cut(s) 66
FatI CATG 1 cut(s) 64
FauI CCCGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 24, 75
LpnPI CCDG 6 cut(s) 27, 93, 179, 186, 193, 197
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 26, 77
MboI GATC 2 cut(s) 24, 75
MboII GAAGA 2 cut(s) 64, 91
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 214
MnlI CCTC 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 3 cut(s) 95, 152, 232
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 2 cut(s) 24, 75
NlaIII CATG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 24
SaqAI TTAA 3 cut(s) 95, 152, 232
Sau3AI GATC 2 cut(s) 24, 75
Sau96I GGNCC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 214
SetI ASST 4 cut(s) 35, 168, 197, 230
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SsiI CCGC 1 cut(s) 208
Tru1I TTAA 3 cut(s) 95, 152, 232
Tru9I TTAA 3 cut(s) 95, 152, 232
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.