Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022251.1

Orthogroup ID

OG0023556

Physical Location & Seq

Genomic Coordinates Reverse (-)

5191 .. 5646

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022251.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtcgtccccctcatccacacgcactgttaaagccatttcggaggtggaagctttcacatcgagtgcagaggacttaaagtttgtggtatcaaaacttagacgacacacattcaaattttactcgcagcagttgcaaacatgggctgcatttgtcatacaagccgcttggcacaggtgtaagaggatgaagcaagccgctaaagtgcaagatagtcatcagagtctcataccaccacctgtctctttctggaaaaagtatggagagaagttggtgcagagtactagaaataataggtttacgatgcatactggtttgaattccagagtatcgtcaacttttgatacaaaagccggaaggaagatgtgccgtggattaaagaaaaattcacaaatggtcatttcttacaaaactccaccttcaaattaccatggattcccaattaaaccaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009877 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0034220 GO:0036377 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

151

Amino Acids

17.25

Weight (kDa)

10.56

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023556)

Species	Orthologous Gene IDs
malus_domestica	MD01G1217500.v1.1
rosa_multiflora	Rmu_sc0000367.1_g000150 Rmu_sc0022251.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	165, 198
AcsI	RAATTY	3 cut(s)	116, 319, 385
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	115, 319, 423
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	230, 247
ApeKI	GCWGC	2 cut(s)	127, 146
ApoI	RAATTY	3 cut(s)	116, 319, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
BbvI	GCAGC	2 cut(s)	133, 139
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	230, 247
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	4 cut(s)	128, 147, 165, 198
BlsI	GCNGC	4 cut(s)	129, 148, 166, 199
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	370, 430
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	370, 430
BseGI	GGATG	2 cut(s)	14, 192
BseJI	GATNNNNATC	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	133, 139
BsgI	GTGCAG	2 cut(s)	87, 296
BsiSI	CCGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	230, 247
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	2 cut(s)	165, 198
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	370, 430
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	2 cut(s)	370, 430
BstF5I	GGATG	2 cut(s)	14, 192
BstMAI	GTCTC	2 cut(s)	230, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	133, 139
BtgI	CCRYGG	2 cut(s)	370, 430
BtsCI	GGATG	2 cut(s)	14, 192
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	141, 431
CviJI	RGCY	6 cut(s)	35, 53, 146, 164, 197, 353
CviKI_1	RGCY	6 cut(s)	35, 53, 146, 164, 197, 353
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	144, 434
FaiI	YATR	6 cut(s)	142, 158, 230, 261, 309, 432
FatI	CATG	2 cut(s)	140, 430
Fnu4HI	GCNGC	4 cut(s)	128, 147, 165, 198
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	128, 147, 165, 198
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	4 cut(s)	128, 147, 165, 198
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	2 cut(s)	144, 434
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	2 cut(s)	223, 435
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	2 cut(s)	300, 336
Hpy188I	TCNGA	2 cut(s)	43, 222
Hpy188III	TCNNGA	2 cut(s)	250, 324
Hpy8I	GTNNAC	2 cut(s)	300, 336
HpyAV	CCTTC	2 cut(s)	351, 429
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	68, 136, 149, 208, 277, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	144, 434
LpnPI	CCDG	7 cut(s)	160, 235, 252, 297, 337, 367, 435
Lsp1109I	GCAGC	2 cut(s)	133, 139
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	285
MboII	GAAGA	1 cut(s)	373
MluCI	AATT	5 cut(s)	116, 319, 385, 424, 441
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	22, 37, 64, 177
Mph1103I	ATGCAT	1 cut(s)	309
MseI	TTAA	4 cut(s)	30, 77, 377, 444
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	430
NlaIII	CATG	2 cut(s)	144, 434
NsiI	ATGCAT	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	4 cut(s)	129, 148, 166, 199
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	30, 77, 377, 444
SatI	GCNGC	4 cut(s)	128, 147, 165, 198
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	6 cut(s)	48, 55, 179, 241, 299, 421
SfaNI	GCATC	1 cut(s)	294
Sse9I	AATT	5 cut(s)	116, 319, 385, 424, 441
SsiI	CCGC	2 cut(s)	165, 198
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	116, 319, 385, 424, 441
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	2 cut(s)	167, 200
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	4 cut(s)	30, 77, 377, 444
Tru9I	TTAA	4 cut(s)	30, 77, 377, 444
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	2 cut(s)	127, 146
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	3 cut(s)	116, 319, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	283
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.