MD02G1003000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0024283
Physical Location & Seq
Forward (+)
233135 .. 234066
932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1003000.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGGGTGGCTTCGCTCCCTCGTCTCCCCGTTGAAGAAGCTCTGGGATCGTCTGCACTCGAGCCACAGAAAGCGAAAAGGGATATATATACTGTACAAGGATGTGAGGTCCTGTCCATGCGAAGATGTGCATGTTCTCTGGTCCATCCTGGTTGACTCGCAGTCGCACCCTACACCACCTGCATTGCCATCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.55

Weight (kDa)

9.69

Isoelectric Point (pI)

83.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024283)

Species Orthologous Gene IDs
malus_domestica MD02G1003000.v1.1 MD15G1146200.v1.1
prunus_persica Prupe.7G268200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 54
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 108, 141
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 2 cut(s) 108, 141
BccI CCATC 2 cut(s) 152, 196
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 108, 141
BmeRI GACNNNNNGTC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 108, 141
BmrFI CCNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 106, 144
BseMI GCAATG 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 28
BsmBI CGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 93
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 93
BstF5I GGATG 2 cut(s) 106, 144
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 106, 144
BveI ACCTGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 108, 141
Csp6I GTAC 1 cut(s) 94
CspCI CAANNNNNGTGG 1 cut(s) 165
CviAII CATG 2 cut(s) 117, 131
CviJI RGCY 3 cut(s) 10, 40, 63
CviKI_1 RGCY 3 cut(s) 10, 40, 63
CviQI GTAC 1 cut(s) 94
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 160
Eam1105I GACNNNNNGTC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 108, 141
Eco88I CYCGRG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 120, 134
FaiI YATR 5 cut(s) 85, 87, 89, 118, 132
FatI CATG 2 cut(s) 116, 130
FokI GGATG 2 cut(s) 113, 131
Hin1II CATG 2 cut(s) 120, 134
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 55, 130, 182
Hsp92II CATG 2 cut(s) 120, 134
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 28, 124, 124, 134, 161, 192
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 46, 134
MluCI AATT 1 cut(s) 193
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 29, 99
MseI TTAA 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 120, 134
NspI RCATGY 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 2 cut(s) 108, 141
PspPPI RGGWCCY 1 cut(s) 108
PspXI VCTCGAGB 1 cut(s) 58
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 196
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 108, 141
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 149
SetI ASST 3 cut(s) 42, 110, 181
Sfr274I CTCGAG 1 cut(s) 58
SinI GGWCC 2 cut(s) 108, 141
SlaI CTCGAG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 193
TatI WGTACW 1 cut(s) 93
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 108, 141
XceI RCATGY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.