MD15G1146200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0024283
Physical Location & Seq
Forward (+)
10876083 .. 10876568
486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1146200.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGGGTGGCTTCACTCCCTCGGCTCCCCGTTGAAGAAGCTCTGGGATCGTCTGCACTCGAGCCACAGAAAGCGAAAGGGGATATATATATTGTACAAGGACGTGAGGTCTTGTCCGTGCGAAGATGTGCATGTTCTGTGGTCCATCCTGGTTGACTCGCAGTCGCAACCTGCAGCTGCTGCATTGCCATCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.38

Weight (kDa)

9.44

Isoelectric Point (pI)

76.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024283)

Species Orthologous Gene IDs
malus_domestica MD02G1003000.v1.1 MD15G1146200.v1.1
prunus_persica Prupe.7G268200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 54
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 34
AhdI GACNNNNNGTC 2 cut(s) 106, 160
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 40, 176
AluI AGCT 2 cut(s) 40, 176
AlwI GGATC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 173, 176, 179
AspS9I GGNCC 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 163, 166, 185
BccI CCATC 2 cut(s) 152, 196
BciT130I CCWGG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 3 cut(s) 174, 177, 180
BlsI GCNGC 3 cut(s) 175, 178, 181
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 141
BmeRI GACNNNNNGTC 2 cut(s) 106, 160
BmeT110I CYCGRG 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 163, 166, 185
BsgI GTGCAG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 93
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 163, 166, 185
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 131, 195
CviJI RGCY 5 cut(s) 10, 24, 40, 63, 176
CviKI_1 RGCY 5 cut(s) 10, 24, 40, 63, 176
CviQI GTAC 1 cut(s) 94
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DriI GACNNNNNGTC 2 cut(s) 106, 160
Eam1105I GACNNNNNGTC 2 cut(s) 106, 160
Eco47I GGWCC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 134, 198
FaiI YATR 5 cut(s) 85, 87, 89, 132, 196
FatI CATG 2 cut(s) 130, 194
Fnu4HI GCNGC 3 cut(s) 174, 177, 180
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 174, 177, 180
GluI GCNGC 3 cut(s) 174, 177, 180
Hin1II CATG 2 cut(s) 134, 198
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 55, 130, 173, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 134, 198
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 28, 134, 161, 183
Lsp1109I GCAGC 3 cut(s) 163, 166, 185
MaeII ACGT 1 cut(s) 102
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 46, 134
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 29, 99
MslI CAYNNNNRTG 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 134, 198
NlaIV GGNNCC 1 cut(s) 25
NspI RCATGY 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 58
PkrI GCNGC 3 cut(s) 175, 178, 181
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 58
PstI CTGCAG 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 193
SatI GCNGC 3 cut(s) 174, 177, 180
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 149
SetI ASST 5 cut(s) 42, 105, 110, 172, 178
SfcI CTRYAG 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 59
TatI WGTACW 1 cut(s) 93
TseI GCWGC 3 cut(s) 173, 176, 179
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 141
XceI RCATGY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.