MD02G1031200.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
2455656 .. 2456282
627 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1031200.v1.1.491

Sequence Viewer

Length: 375 bp
ATGGTGCAGGCTTGCTTAGGCTTCACTTCCACGATTGATTCGTTCTTGGTTTTGATGGTTCGGTTTTTTATCAAGAGTGCTTCGGCTGAGAGGAACGCCTTGCCAGATCTCAGGTTGGAAGGATTCGAAGTGATTGATGAGGCAAAAGCTCAAGTAGAGGCCTTGTATCTTCTAGTAGTGACGGTCCAAGTTGGACAGTGCCTACCAAAAGAAGGCATGGCGGCACCTCTTTGTCATCTCAAGCCTCAAAACCTACCTTCTCCTCTCGATTCTGTTGCTGCCCAAAGGCAAAAATATGTTGCTAAAGGCCTCGACGATCATGATCTCATAACCCTAGGTAGTAACCAAACTCTCTTAGACACGTTTTGCTATTAA
Functional Annotation

Protein Analysis

125

Amino Acids

13.61

Weight (kDa)

4.99

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024365)

Species Orthologous Gene IDs
malus_domestica MD02G1031200.v1.1
pyrus_communis pycom02g02610
rosa_rugosa Rorug01G0483200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 360
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AoxI GGCC 2 cut(s) 159, 307
ApeKI GCWGC 1 cut(s) 278
AspA2I CCTAGG 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 334
BanI GGYRCC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BfaI CTAG 2 cut(s) 173, 335
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 222, 279
BlnI CCTAGG 1 cut(s) 334
BlsI GCNGC 2 cut(s) 223, 280
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 135, 224
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 78, 124
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 161, 309
BshNI GGYRCC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 212
BsnI GGCC 2 cut(s) 161, 309
Bsp119I TTCGAA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 106, 316, 322
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 161, 309
BspCNI CTCAG 2 cut(s) 79, 123
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 3 cut(s) 106, 316, 322
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 184, 198
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 9, 13
BstDEI CTNAG 4 cut(s) 16, 87, 110, 355
BstKTI GATC 3 cut(s) 109, 319, 325
BstMBI GATC 3 cut(s) 106, 316, 322
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 161, 309
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 9, 13
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 184
CviAII CATG 2 cut(s) 217, 320
CviJI RGCY 7 cut(s) 11, 21, 86, 149, 161, 244, 309
CviKI_1 RGCY 7 cut(s) 11, 21, 86, 149, 161, 244, 309
DdeI CTNAG 4 cut(s) 16, 87, 110, 355
DpnI GATC 3 cut(s) 108, 318, 324
DpnII GATC 3 cut(s) 106, 316, 322
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 2 cut(s) 161, 309
Eco47I GGWCC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 220, 323
FaiI YATR 4 cut(s) 218, 297, 321, 329
FatI CATG 2 cut(s) 216, 319
Fnu4HI GCNGC 2 cut(s) 222, 279
Fsp4HI GCNGC 2 cut(s) 222, 279
FspBI CTAG 2 cut(s) 173, 335
GluI GCNGC 2 cut(s) 222, 279
HaeIII GGCC 2 cut(s) 161, 309
Hin1II CATG 2 cut(s) 220, 323
HinfI GANTC 3 cut(s) 38, 123, 269
Hpy188III TCNNGA 3 cut(s) 73, 266, 320
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 113, 206, 267
HpyCH4III ACNGT 2 cut(s) 184, 198
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 4 cut(s) 16, 87, 110, 355
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 2 cut(s) 220, 323
Kzo9I GATC 3 cut(s) 106, 316, 322
LpnPI CCDG 2 cut(s) 97, 117
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 2 cut(s) 173, 335
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 178, 341
MalI GATC 3 cut(s) 108, 318, 324
MboI GATC 3 cut(s) 106, 316, 322
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 96, 172
MnlI CCTC 7 cut(s) 84, 133, 151, 237, 255, 273, 320
MseI TTAA 1 cut(s) 373
NdeII GATC 3 cut(s) 106, 316, 322
NlaIII CATG 2 cut(s) 220, 323
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 178
NspV TTCGAA 1 cut(s) 126
PagI TCATGA 1 cut(s) 319
PceI AGGCCT 2 cut(s) 161, 309
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 3 cut(s) 38, 123, 269
PkrI GCNGC 2 cut(s) 223, 280
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 106
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 2 cut(s) 222, 279
Sau3AI GATC 3 cut(s) 106, 316, 322
Sau96I GGNCC 1 cut(s) 184
SetI ASST 7 cut(s) 116, 151, 229, 255, 259, 340, 365
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 2 cut(s) 150, 239
SmoI CTYRAG 2 cut(s) 150, 239
SseBI AGGCCT 2 cut(s) 161, 309
SsiI CCGC 1 cut(s) 221
SspMI CTAG 2 cut(s) 173, 335
StuI AGGCCT 2 cut(s) 161, 309
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 184, 198
TaiI ACGT 1 cut(s) 365
TaqI TCGA 3 cut(s) 126, 267, 312
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 3 cut(s) 38, 123, 269
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 184
XmaJI CCTAGG 1 cut(s) 334
XspI CTAG 2 cut(s) 173, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.