Rorug01G0483200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0024365
Physical Location & Seq
Forward (+)
57046350 .. 57049288
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0483200.1

Sequence Viewer

Length: 648 bp
ATGAATCTGTTTAGGTTGGCAGGAGACATGACCCACCTCCTGAGCATACTGGTTCTGTTCCTTAAGATTCACACCACCAAATCTTGTGCAGGGATTTCCCTCAAAACTCAAGAACTGTATGTGTTGGTGTTTCTCACCCGGTACATGGACTTGATTGTGAAGTATTACTCTTTGTATAACACATTAACCAAGCTCATCTTCATCGGAACTTCTTTCGCCACGGCCTGGTACATGAGGTACCATAAAGTAGTGAAGCAAACATACAACAAGGATCAAGATACTTTCAGACACTACTATCTGATCCTTGTTTGCTTTGTGTTGGCTCTTCTGATTCCCCATGATTTTACTGTAATTCAAGTCTTGTGGACATTTTCAATATACCTTGAAGCTGTTGCAATCTTACCGCAATTGGTACTACTTCAACGTTCAAGAAACATTGACAACCTAACTGGAAACTACGTTTTTCTTCTTGGTACTTATCGAGCCCTATATCTTCTCAACTGGATCTATCGTTTCTTCACAGAGTTGCACAGAGTTCGCTGGATACCTTGGATCTCAGGCCTAGTTCAGACTGCTCTTTATGCCGACTTTTTCTACTATTATATCAAGAGCTGGAAGAAGGATGAAGAGCTTAAGCTTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

215

Amino Acids

25.71

Weight (kDa)

9.43

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 28 - 171 1e-56 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024365)

Species Orthologous Gene IDs
malus_domestica MD02G1031200.v1.1
pyrus_communis pycom02g02610
rosa_rugosa Rorug01G0483200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 225
AciI CCGC 1 cut(s) 404
AclI AACGTT 1 cut(s) 424
AclWI GGATC 4 cut(s) 279, 295, 512, 560
AfaI GTAC 5 cut(s) 143, 230, 239, 414, 475
AfiI CCNNNNNNNGG 2 cut(s) 145, 225
AflII CTTAAG 2 cut(s) 62, 632
AgsI TTSAA 5 cut(s) 356, 375, 386, 422, 429
AjnI CCWGG 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 5 cut(s) 193, 389, 612, 631, 637
AluI AGCT 5 cut(s) 193, 389, 612, 631, 637
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 4 cut(s) 279, 295, 512, 560
AoxI GGCC 2 cut(s) 222, 559
Asp718I GGTACC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 127
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 487
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BceAI ACGGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 537
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 563
BfrI CTTAAG 2 cut(s) 62, 632
BfuI GTATCC 1 cut(s) 537
Bme1390I CCNGG 2 cut(s) 139, 226
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 2 cut(s) 139, 226
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 219, 548
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 225
Bse1I ACTGG 3 cut(s) 54, 454, 506
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 219, 548
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 2 cut(s) 145, 225
BseMII CTCAG 2 cut(s) 32, 570
BseNI ACTGG 3 cut(s) 54, 454, 506
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 2 cut(s) 224, 561
BshNI GGYRCC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 145, 225
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 2 cut(s) 224, 561
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 4 cut(s) 271, 300, 504, 552
BspACI CCGC 1 cut(s) 404
BspANI GGCC 2 cut(s) 224, 561
BspCNI CTCAG 2 cut(s) 33, 569
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 4 cut(s) 279, 295, 512, 560
BspQI GCTCTTC 2 cut(s) 330, 621
BspT107I GGYRCC 1 cut(s) 237
BspTI CTTAAG 2 cut(s) 62, 632
BsrI ACTGG 3 cut(s) 54, 454, 506
BssECI CCNNGG 2 cut(s) 219, 548
BssMI GATC 4 cut(s) 271, 300, 504, 552
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 117, 349
Bst6I CTCTTC 2 cut(s) 330, 621
BstAFI CTTAAG 2 cut(s) 62, 632
BstDEI CTNAG 2 cut(s) 41, 556
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 628
BstKTI GATC 4 cut(s) 274, 303, 507, 555
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 4 cut(s) 271, 300, 504, 552
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 137, 224
BstX2I RGATCY 2 cut(s) 504, 552
BstYI RGATCY 2 cut(s) 504, 552
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 2 cut(s) 224, 561
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 628
Csp6I GTAC 5 cut(s) 142, 229, 238, 413, 474
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviAII CATG 4 cut(s) 28, 145, 232, 338
CviJI RGCY 9 cut(s) 193, 224, 323, 389, 485, 561, 612, 631, 637
CviKI_1 RGCY 9 cut(s) 193, 224, 323, 389, 485, 561, 612, 631, 637
CviQI GTAC 5 cut(s) 142, 229, 238, 413, 474
DdeI CTNAG 2 cut(s) 41, 556
DpnI GATC 4 cut(s) 273, 302, 506, 554
DpnII GATC 4 cut(s) 271, 300, 504, 552
Eam1104I CTCTTC 2 cut(s) 330, 621
EarI CTCTTC 2 cut(s) 330, 621
Eco130I CCWWGG 1 cut(s) 548
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 4 cut(s) 31, 148, 235, 341
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 4 cut(s) 27, 144, 231, 337
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 487
FspBI CTAG 1 cut(s) 563
HaeIII GGCC 2 cut(s) 224, 561
HapII CCGG 1 cut(s) 139
Hin1II CATG 4 cut(s) 31, 148, 235, 341
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 3 cut(s) 4, 67, 331
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 5 cut(s) 206, 287, 300, 330, 570
Hpy188III TCNNGA 5 cut(s) 40, 110, 275, 429, 607
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 613
HpyCH4III ACNGT 2 cut(s) 117, 349
HpyCH4IV ACGT 2 cut(s) 424, 459
HpyCH4V TGCA 3 cut(s) 89, 395, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 2 cut(s) 41, 556
HpySE526I ACGT 2 cut(s) 424, 459
Hsp92II CATG 4 cut(s) 31, 148, 235, 341
KpnI GGTACC 1 cut(s) 241
Kzo9I GATC 4 cut(s) 271, 300, 504, 552
LguI GCTCTTC 2 cut(s) 330, 621
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 424, 459
MalI GATC 4 cut(s) 273, 302, 506, 554
MboI GATC 4 cut(s) 271, 300, 504, 552
MboII GAAGA 7 cut(s) 190, 317, 458, 485, 508, 628, 638
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 504, 552
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 2 cut(s) 351, 407
MnlI CCTC 3 cut(s) 47, 110, 228
MseI TTAA 3 cut(s) 63, 185, 633
MspCI CTTAAG 2 cut(s) 62, 632
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 139, 226
MunI CAATTG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 139
NdeII GATC 4 cut(s) 271, 300, 504, 552
NlaIII CATG 4 cut(s) 31, 148, 235, 341
NlaIV GGNNCC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 561
PciSI GCTCTTC 2 cut(s) 330, 621
PfeI GAWTC 3 cut(s) 4, 67, 331
PflMI CCANNNNNTGG 1 cut(s) 225
Psp1406I AACGTT 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 239
PsuI RGATCY 2 cut(s) 504, 552
RsaI GTAC 5 cut(s) 143, 230, 239, 414, 475
RsaNI GTAC 5 cut(s) 142, 229, 238, 413, 474
SapI GCTCTTC 2 cut(s) 330, 621
SaqAI TTAA 3 cut(s) 63, 185, 633
Sau3AI GATC 4 cut(s) 271, 300, 504, 552
ScrFI CCNGG 2 cut(s) 139, 226
SduI GDGCHC 1 cut(s) 487
SmlI CTYRAG 3 cut(s) 62, 108, 632
SmoI CTYRAG 3 cut(s) 62, 108, 632
Sse9I AATT 2 cut(s) 351, 407
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 1 cut(s) 404
SspMI CTAG 1 cut(s) 563
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 137, 224
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 117, 349
TaiI ACGT 2 cut(s) 427, 462
TaqI TCGA 1 cut(s) 481
TasI AATT 2 cut(s) 351, 407
TfiI GAWTC 3 cut(s) 4, 67, 331
Tru1I TTAA 3 cut(s) 63, 185, 633
Tru9I TTAA 3 cut(s) 63, 185, 633
TspDTI ATGAA 3 cut(s) 17, 190, 639
Van91I CCANNNNNTGG 1 cut(s) 225
Vha464I CTTAAG 2 cut(s) 62, 632
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.