MD02G1040500.v1.1

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0028588
Physical Location & Seq
Forward (+)
3290062 .. 3291230
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1040500.v1.1.491

Sequence Viewer

Length: 300 bp
ATGAAAGAACTCAAGACAAACCGAGTAGCTCAGCAACGAAACCAACCAGCTGCACAAAATCTTCCTCAAAAAATGAGTCATCGAAACCGTGATGACAAGCATTCAAGAGGCAGACAGTTTGGGGGAAAAGGGGAGGCAAGAGGAAGAGCCCGATGGGAAAAGAGAAAAGCCGGGGCAAAGCCTTCAATTGGAGGTGCCTGTACAGGTAGTAGTCGTGATGAGGAACTTGCACGGCAGCTCCAAAATCAATTTGATTTGGATGATTATCATGTCAGTGTGTCAGCATATTCTGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

100

Amino Acids

11.2

Weight (kDa)

10.16

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028588)

Species Orthologous Gene IDs
malus_domestica MD02G1040500.v1.1
pyrus_communis pycom02g03180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 105, 186
AluBI AGCT 3 cut(s) 29, 50, 238
AluI AGCT 3 cut(s) 29, 50, 238
ApeKI GCWGC 2 cut(s) 50, 235
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AsuC2I CCSGG 1 cut(s) 172
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 37, 247
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 248
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 172
BisI GCNGC 2 cut(s) 51, 236
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 52, 237
Bme1390I CCNGG 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 37, 247
BsgI GTGCAG 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 188
BsmI GAATGC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 292
Bsp1720I GCTNAGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 89, 117
Bst6I CTCTTC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 37, 247
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 280
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 29, 50, 149, 170, 181, 238
CviKI_1 RGCY 6 cut(s) 29, 50, 149, 170, 181, 238
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 1 cut(s) 272
FaiI YATR 2 cut(s) 270, 286
FatI CATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 51, 236
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 51, 236
GluI GCNGC 2 cut(s) 51, 236
HapII CCGG 1 cut(s) 171
Hin1II CATG 1 cut(s) 272
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 13, 105, 215
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 89, 117
HpyCH4V TGCA 2 cut(s) 53, 230
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 4 cut(s) 60, 184, 189, 211
Lsp1109I GCAGC 2 cut(s) 37, 247
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 53, 156
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 2 cut(s) 186, 248
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 6 cut(s) 75, 101, 127, 134, 185, 214
MseI TTAA 1 cut(s) 298
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 172
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 139
PctI GAATGC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 52, 237
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 2 cut(s) 51, 236
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 151
SetI ASST 5 cut(s) 31, 52, 196, 208, 240
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 186, 248
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 89, 117
TaqI TCGA 1 cut(s) 82
TasI AATT 2 cut(s) 186, 248
TatI WGTACW 1 cut(s) 200
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 50, 235
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.