pycom02g03180

Tudor domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
2069792 .. 2070582
791 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03180.2

Sequence Viewer

Length: 207 bp
ATGACGACGATAAATCTTATAAAAATAGTGAGACAGATAACACTCCTAAGGCAGATTCCCTTGATGAAAGAACTCAAGACCAAAGAAGCTGTCCCTGTTCAAAACCAAGCAGCCGCACAAAAGCTTCTTAAAAAAATGAGTCATCAAAACCGGGATGACATGCATTCAAGAGGCAGACAGTTTGGGGGGAAGAGGAGGATTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.91

Weight (kDa)

11.65

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028588)

Species Orthologous Gene IDs
malus_domestica MD02G1040500.v1.1
pyrus_communis pycom02g03180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
AciI CCGC 1 cut(s) 114
AgsI TTSAA 2 cut(s) 101, 168
AluBI AGCT 2 cut(s) 89, 124
AluI AGCT 2 cut(s) 89, 124
Alw26I GTCTC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AsuC2I CCSGG 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 47
BbvI GCAGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 25
BisI GCNGC 2 cut(s) 111, 114
BlsI GCNGC 2 cut(s) 112, 115
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 163
BspACI CCGC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 160
CviAII CATG 1 cut(s) 160
CviJI RGCY 3 cut(s) 89, 113, 124
CviKI_1 RGCY 3 cut(s) 89, 113, 124
DdeI CTNAG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 165
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 20, 161
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 111, 114
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 111, 114
GluI GCNGC 2 cut(s) 111, 114
HapII CCGG 1 cut(s) 151
Hin1II CATG 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 55, 139
HpaII CCGG 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 76, 168
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 1 cut(s) 163
LpnPI CCDG 2 cut(s) 108, 164
Lsp1109I GCAGC 1 cut(s) 122
MboII GAAGA 1 cut(s) 202
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 3 cut(s) 164, 186, 189
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 1 cut(s) 129
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 152
NlaIII CATG 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 1 cut(s) 163
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 112, 115
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PsiI TTATAA 1 cut(s) 20
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 111, 114
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 152
SetI ASST 2 cut(s) 91, 126
SgeI CNNG 8 cut(s) 73, 88, 107, 119, 163, 164, 172, 180
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 180
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 80
XceI RCATGY 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.