Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0028559

Physical Location & Seq

Genomic Coordinates Reverse (-)

8222714 .. 8223751

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1102500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCCTGCTTCTACTGATGAAGAAGATGACGATAGGATGTTCTTGGAGAGTACTTGGTCCAACAACGCAAAGCAAAGGGATTGCGGTGACGGTGAAGTAGAAGAAGTTGAAGAAATCAAACTTGACCTTAACTCCACTCCTGCTCCCAGTGAAGGCGCCGAAGGATATAACTTAGAGGGAGAAGTTTGGCCAGAAGATTGGGACCAACAAGTAGGAGGTTGTGATGATGATCATGATGACTTCGACGGCAATGATCAGGACTATTATGATGATGGTGGTTATGATGACAATGACGACGATGACGTGGGTAATAAAAGAATCAAACTTGATCTTAACTCCACTCCTCTCAGTGAAGAAGAAGTCGAAGAACAAGAAGTTAGGCAAGAGGAGAAGGAAGAAGATCAACGTCAGTACCAATTAGACGAAGAAGACAGACCAGTAGAAGTTCGGTACCAATCAGAAGCAGAAGAAAAAGAAAAAGAAGAAGAAGTTAGGCCAGAGGAAGGACAAGATCAGTACCAAGAAGATGACGAAGAAGATGATCAATACTGTTACCAATCCAAAGTAGAAGATCAAAGATGTTACCAAGCAGAAGAAAAAGAGGTTAGGTCAGAAGAATCTTGGCATCCATCAGAAGAAGAAGAAGAAGTTGTTAGGTTGCCCAATACTGCCAGGTCCAACCTTGACTTCAGTAGAACACCTACGGAAGGAGAACTAGAAGATCTCAAAAATAGTACTATTCCTCCTGCCAAAAAGTGGGATGATGAACCAGAACACTCCTCCGACAACAACCACTCTTCTTTTGTTTGTGAAATCTGTGTTCAGCACAAGGTTTCATCCGAGTGGTTTGCCCTAGAAAACTGTGGACATGCTTATTGCAAGGACTGCATGATCAAGCACGTGGCCACCAAGCTTCGACAGAACATCGTAAGCATTCCGTGCCCCACTCCTGATTGCGTTTCAGGTTCGCTAAGTCCCGAGCATTGTCGTCCCATTCTCCCTCCTGACCTGTTTGACAGTTGGGCAAGTGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

346

Amino Acids

39.83

Weight (kDa)

4.06

Isoelectric Point (pI)

66.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028559)

Species	Orthologous Gene IDs
malus_domestica	MD02G1102500.v1.1
pyrus_communis	pycom02g08020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	2 cut(s)	155, 450
AccB7I	CCANNNNNTGG	1 cut(s)	756
AciI	CCGC	1 cut(s)	84
AcoI	YGGCCR	2 cut(s)	188, 903
AcuI	CTGAAG	1 cut(s)	673
AcvI	CACGTG	1 cut(s)	901
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	5 cut(s)	52, 413, 452, 518, 736
AfiI	CCNNNNNNNGG	4 cut(s)	152, 503, 707, 756
AgsI	TTSAA	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	671
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	1 cut(s)	913
AluI	AGCT	1 cut(s)	913
Ama87I	CYCGRG	1 cut(s)	977
AoxI	GGCC	3 cut(s)	188, 494, 903
Asp718I	GGTACC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	57, 202, 675
AsuHPI	GGTGA	2 cut(s)	98, 104
AvaI	CYCGRG	1 cut(s)	977
AvaII	GGWCC	3 cut(s)	57, 202, 675
BaeGI	GKGCMC	1 cut(s)	944
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	2 cut(s)	190, 905
BanI	GGYRCC	2 cut(s)	155, 450
BbrPI	CACGTG	1 cut(s)	901
BbsI	GAAGAC	1 cut(s)	435
BccI	CCATC	2 cut(s)	266, 637
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	4 cut(s)	229, 253, 541, 891
BfaI	CTAG	2 cut(s)	716, 854
BfoI	RGCGCY	1 cut(s)	159
BglII	AGATCT	1 cut(s)	721
BmcAI	AGTACT	2 cut(s)	52, 736
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	3 cut(s)	57, 202, 675
BmeT110I	CYCGRG	1 cut(s)	977
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	57, 202, 675
BmiI	GGNNCC	3 cut(s)	157, 203, 452
BmrFI	CCNGG	1 cut(s)	673
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	901
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 127, 146, 157, 727, 757
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 503, 707, 756
Bse1I	ACTGG	2 cut(s)	147, 437
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	673
BseGI	GGATG	4 cut(s)	42, 625, 766, 836
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	4 cut(s)	152, 503, 707, 756
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	147, 437
BseRI	GAGGAG	3 cut(s)	333, 401, 769
BseSI	GKGCMC	1 cut(s)	944
BshFI	GGCC	3 cut(s)	190, 496, 905
BshNI	GGYRCC	2 cut(s)	155, 450
BsiHKCI	CYCGRG	1 cut(s)	977
BslFI	GGGAC	3 cut(s)	215, 960, 975
BslI	CCNNNNNNNGG	4 cut(s)	152, 503, 707, 756
BsmFI	GGGAC	3 cut(s)	215, 960, 975
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	3 cut(s)	190, 496, 905
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	1 cut(s)	944
Bsp143I	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	190, 496, 905
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	157, 203, 452
BspT107I	GGYRCC	2 cut(s)	155, 450
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	147, 437
BssMI	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	4 cut(s)	92, 551, 863, 1019
Bst6I	CTCTTC	1 cut(s)	802
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	2 cut(s)	885, 939
BstBAI	YACGTR	1 cut(s)	901
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	172, 347, 971
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	4 cut(s)	42, 625, 766, 836
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	9 cut(s)	232, 256, 331, 403, 514, 544, 574, 724, 894
BstMBI	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	885, 939
BstNI	CCWGG	1 cut(s)	673
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	944
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	190, 496, 905
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	42, 625, 766, 836
BtsIMutI	CAGTG	2 cut(s)	154, 355
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	57, 202, 675
Csp6I	GTAC	5 cut(s)	51, 412, 451, 517, 735
CviAII	CATG	3 cut(s)	233, 869, 889
CviJI	RGCY	4 cut(s)	190, 496, 905, 913
CviKI_1	RGCY	4 cut(s)	190, 496, 905, 913
CviQI	GTAC	5 cut(s)	51, 412, 451, 517, 735
DdeI	CTNAG	3 cut(s)	172, 347, 971
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	9 cut(s)	231, 255, 330, 402, 513, 543, 573, 723, 893
DpnII	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
EaeI	YGGCCR	2 cut(s)	188, 903
Eam1104I	CTCTTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	802
Eco47I	GGWCC	3 cut(s)	57, 202, 675
Eco57I	CTGAAG	1 cut(s)	673
Eco72I	CACGTG	1 cut(s)	901
Eco88I	CYCGRG	1 cut(s)	977
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	671
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaeI	CATG	3 cut(s)	236, 872, 892
FaiI	YATR	6 cut(s)	168, 234, 267, 282, 870, 890
FaqI	GGGAC	3 cut(s)	215, 960, 975
FatI	CATG	3 cut(s)	232, 868, 888
FbaI	TGATCA	4 cut(s)	229, 253, 541, 891
FokI	GGATG	4 cut(s)	49, 612, 773, 823
FspBI	CTAG	2 cut(s)	716, 854
GlaI	GCGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	190, 496, 905
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	236, 872, 892
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	2 cut(s)	318, 617
HphI	GGTGA	2 cut(s)	98, 104
Hpy166II	GTNNAC	1 cut(s)	866
Hpy188I	TCNGA	5 cut(s)	460, 613, 634, 784, 841
Hpy188III	TCNNGA	5 cut(s)	233, 257, 950, 977, 1004
Hpy8I	GTNNAC	1 cut(s)	866
Hpy99I	CGWCG	2 cut(s)	248, 299
HpyAV	CCTTC	5 cut(s)	146, 155, 385, 497, 701
HpyCH4III	ACNGT	4 cut(s)	92, 551, 863, 1019
HpyCH4IV	ACGT	3 cut(s)	303, 406, 900
HpyCH4V	TGCA	2 cut(s)	879, 888
HpyF10VI	GCNNNNNNNGC	2 cut(s)	885, 939
HpyF3I	CTNAG	3 cut(s)	172, 347, 971
HpySE526I	ACGT	3 cut(s)	303, 406, 900
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	236, 872, 892
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	454
Ksp22I	TGATCA	4 cut(s)	229, 253, 541, 891
Kzo9I	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
LmnI	GCTCC	1 cut(s)	148
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	716, 854
MaeII	ACGT	3 cut(s)	303, 406, 900
MaeIII	GTNAC	3 cut(s)	86, 551, 581
MalI	GATC	9 cut(s)	231, 255, 330, 402, 513, 543, 573, 723, 893
MboI	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	944
MlsI	TGGCCA	2 cut(s)	190, 905
MluCI	AATT	1 cut(s)	416
MluNI	TGGCCA	2 cut(s)	190, 905
Mly113I	GGCGCC	1 cut(s)	156
MmeI	TCCRAC	3 cut(s)	84, 702, 807
MnlI	CCTC	9 cut(s)	169, 209, 354, 379, 493, 595, 753, 790, 1011
Mox20I	TGGCCA	2 cut(s)	190, 905
MscI	TGGCCA	2 cut(s)	190, 905
MseI	TTAA	2 cut(s)	129, 333
MslI	CAYNNNNRTG	1 cut(s)	841
Msp20I	TGGCCA	2 cut(s)	190, 905
MspR9I	CCNGG	1 cut(s)	673
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	2 cut(s)	885, 939
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
NlaIII	CATG	3 cut(s)	236, 872, 892
NlaIV	GGNNCC	3 cut(s)	157, 203, 452
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	872
PagI	TCATGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	318, 617
PflMI	CCANNNNNTGG	1 cut(s)	756
PluTI	GGCGCC	1 cut(s)	159
PmaCI	CACGTG	1 cut(s)	901
PmlI	CACGTG	1 cut(s)	901
Ppu21I	YACGTR	1 cut(s)	901
Psp6I	CCWGG	1 cut(s)	671
PspCI	CACGTG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	3 cut(s)	157, 203, 452
PspPI	GGNCC	3 cut(s)	57, 202, 675
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	5 cut(s)	52, 413, 452, 518, 736
RsaNI	GTAC	5 cut(s)	51, 412, 451, 517, 735
RseI	CAYNNNNRTG	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	129, 333
Sau3AI	GATC	9 cut(s)	229, 253, 328, 400, 511, 541, 571, 721, 891
Sau96I	GGNCC	3 cut(s)	57, 202, 675
ScaI	AGTACT	2 cut(s)	52, 736
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	1 cut(s)	944
SfaNI	GCATC	1 cut(s)	634
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	3 cut(s)	57, 202, 675
SmiMI	CAYNNNNRTG	1 cut(s)	841
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	84
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	716, 854
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	4 cut(s)	92, 551, 863, 1019
TaiI	ACGT	3 cut(s)	306, 409, 903
TaqI	TCGA	3 cut(s)	243, 363, 916
TasI	AATT	1 cut(s)	416
TatI	WGTACW	2 cut(s)	50, 734
TfiI	GAWTC	2 cut(s)	318, 617
Tru1I	TTAA	2 cut(s)	129, 333
Tru9I	TTAA	2 cut(s)	129, 333
TscAI	CASTG	2 cut(s)	154, 355
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	33, 780, 825
TspGWI	ACGGA	2 cut(s)	719, 927
TspRI	CASTG	2 cut(s)	154, 355
Van91I	CCANNNNNTGG	1 cut(s)	756
VpaK11BI	GGWCC	3 cut(s)	57, 202, 675
XagI	CCTNNNNNAGG	1 cut(s)	705
XceI	RCATGY	1 cut(s)	872
XspI	CTAG	2 cut(s)	716, 854
ZrmI	AGTACT	2 cut(s)	52, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.