protein polyubiquitination
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1102500.v1.1 |
| pyrus_communis | pycom02g08020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 927 |
| AccBSI | CCGCTC | 1 cut(s) | 141 |
| AciI | CCGC | 2 cut(s) | 141, 1057 |
| AclWI | GGATC | 2 cut(s) | 74, 246 |
| AcoI | YGGCCR | 1 cut(s) | 1203 |
| AcsI | RAATTY | 1 cut(s) | 16 |
| AcuI | CTGAAG | 1 cut(s) | 973 |
| AcvI | CACGTG | 1 cut(s) | 1201 |
| AfaI | GTAC | 7 cut(s) | 175, 193, 298, 656, 695, 818, 1036 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 803, 1007, 1056 |
| AgsI | TTSAA | 1 cut(s) | 356 |
| AjiI | CACGTC | 1 cut(s) | 547 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 971, 1003 |
| AluBI | AGCT | 2 cut(s) | 27, 1213 |
| AluI | AGCT | 2 cut(s) | 27, 1213 |
| AlwI | GGATC | 2 cut(s) | 74, 246 |
| Ama87I | CYCGRG | 1 cut(s) | 136 |
| AoxI | GGCC | 2 cut(s) | 794, 1203 |
| ApeKI | GCWGC | 1 cut(s) | 96 |
| ApoI | RAATTY | 1 cut(s) | 16 |
| AspS9I | GGNCC | 3 cut(s) | 303, 448, 975 |
| AsuHPI | GGTGA | 1 cut(s) | 350 |
| AvaI | CYCGRG | 1 cut(s) | 136 |
| AvaII | GGWCC | 3 cut(s) | 303, 448, 975 |
| BaeGI | GKGCMC | 1 cut(s) | 1244 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 638, 671 |
| BalI | TGGCCA | 1 cut(s) | 1205 |
| BanI | GGYRCC | 1 cut(s) | 927 |
| BbrPI | CACGTG | 1 cut(s) | 1201 |
| BbsI | GAAGAC | 2 cut(s) | 678, 843 |
| BbvI | GCAGC | 1 cut(s) | 108 |
| BccI | CCATC | 3 cut(s) | 329, 509, 940 |
| BceAI | ACGGC | 1 cut(s) | 505 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BclI | TGATCA | 3 cut(s) | 496, 844, 1191 |
| BfaI | CTAG | 2 cut(s) | 177, 1016 |
| BglII | AGATCT | 1 cut(s) | 1021 |
| BisI | GCNGC | 2 cut(s) | 97, 142 |
| BlsI | GCNGC | 2 cut(s) | 98, 143 |
| BmcAI | AGTACT | 4 cut(s) | 175, 193, 298, 1036 |
| Bme18I | GGWCC | 3 cut(s) | 303, 448, 975 |
| BmeT110I | CYCGRG | 1 cut(s) | 136 |
| BmgBI | CACGTC | 1 cut(s) | 547 |
| BmgT120I | GGNCC | 3 cut(s) | 303, 448, 975 |
| BmiI | GGNNCC | 2 cut(s) | 449, 929 |
| BmrI | ACTGGG | 1 cut(s) | 387 |
| BmsI | GCATC | 2 cut(s) | 76, 273 |
| BmuI | ACTGGG | 1 cut(s) | 387 |
| BoxI | GACNNNNGTC | 1 cut(s) | 105 |
| BpiI | GAAGAC | 2 cut(s) | 678, 843 |
| BsaAI | YACGTR | 1 cut(s) | 1201 |
| BsaBI | GATNNNNATC | 1 cut(s) | 71 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 336, 362, 366, 373, 392, 403, 1027, 1057 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 803, 1007, 1056 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| Bse3DI | GCAATG | 1 cut(s) | 499 |
| Bse8I | GATNNNNATC | 1 cut(s) | 71 |
| BseGI | GGATG | 2 cut(s) | 288, 1136 |
| BseJI | GATNNNNATC | 1 cut(s) | 71 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 803, 1007, 1056 |
| BseMI | GCAATG | 1 cut(s) | 499 |
| BseMII | CTCAG | 1 cut(s) | 604 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BseRI | GAGGAG | 3 cut(s) | 576, 644, 1069 |
| BseSI | GKGCMC | 1 cut(s) | 1244 |
| BseXI | GCAGC | 1 cut(s) | 108 |
| BshFI | GGCC | 2 cut(s) | 796, 1205 |
| BshNI | GGYRCC | 1 cut(s) | 927 |
| BsiHKCI | CYCGRG | 1 cut(s) | 136 |
| BslFI | GGGAC | 4 cut(s) | 461, 1073, 1260, 1275 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 803, 1007, 1056 |
| BsmFI | GGGAC | 4 cut(s) | 461, 1073, 1260, 1275 |
| BsmI | GAATGC | 1 cut(s) | 1233 |
| BsnI | GGCC | 2 cut(s) | 796, 1205 |
| BsoBI | CYCGRG | 1 cut(s) | 136 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1244 |
| BspACI | CCGC | 2 cut(s) | 141, 1057 |
| BspANI | GGCC | 2 cut(s) | 796, 1205 |
| BspCNI | CTCAG | 1 cut(s) | 603 |
| BspLI | GGNNCC | 2 cut(s) | 449, 929 |
| BspPI | GGATC | 2 cut(s) | 74, 246 |
| BspT107I | GGYRCC | 1 cut(s) | 927 |
| BsrBI | CCGCTC | 1 cut(s) | 141 |
| BsrDI | GCAATG | 1 cut(s) | 499 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| Bst4CI | ACNGT | 3 cut(s) | 854, 1163, 1319 |
| Bst6I | CTCTTC | 1 cut(s) | 1102 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1185, 1239 |
| BstBAI | YACGTR | 1 cut(s) | 1201 |
| BstC8I | GCNNGC | 3 cut(s) | 116, 120, 252 |
| BstDEI | CTNAG | 3 cut(s) | 418, 590, 1271 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1005 |
| BstF5I | GGATG | 2 cut(s) | 288, 1136 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1185, 1239 |
| BstNSI | RCATGY | 2 cut(s) | 250, 1172 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 105 |
| BstSLI | GKGCMC | 1 cut(s) | 1244 |
| BstV1I | GCAGC | 1 cut(s) | 108 |
| BstV2I | GAAGAC | 2 cut(s) | 678, 843 |
| BstX2I | RGATCY | 2 cut(s) | 238, 1021 |
| BstYI | RGATCY | 2 cut(s) | 238, 1021 |
| BsuRI | GGCC | 2 cut(s) | 796, 1205 |
| BtgZI | GCGATG | 1 cut(s) | 159 |
| BtrI | CACGTC | 1 cut(s) | 547 |
| BtsCI | GGATG | 2 cut(s) | 288, 1136 |
| BtsIMutI | CAGTG | 2 cut(s) | 400, 598 |
| Cac8I | GCNNGC | 3 cut(s) | 116, 120, 252 |
| Cfr13I | GGNCC | 3 cut(s) | 303, 448, 975 |
| CseI | GACGC | 1 cut(s) | 78 |
| Csp6I | GTAC | 7 cut(s) | 174, 192, 297, 655, 694, 817, 1035 |
| CviAII | CATG | 3 cut(s) | 247, 1169, 1189 |
| CviJI | RGCY | 6 cut(s) | 27, 41, 122, 796, 1205, 1213 |
| CviKI_1 | RGCY | 6 cut(s) | 27, 41, 122, 796, 1205, 1213 |
| CviQI | GTAC | 7 cut(s) | 174, 192, 297, 655, 694, 817, 1035 |
| DdeI | CTNAG | 3 cut(s) | 418, 590, 1271 |
| EaeI | YGGCCR | 1 cut(s) | 1203 |
| Eam1104I | CTCTTC | 1 cut(s) | 1102 |
| EarI | CTCTTC | 1 cut(s) | 1102 |
| Eco47I | GGWCC | 3 cut(s) | 303, 448, 975 |
| Eco57I | CTGAAG | 1 cut(s) | 973 |
| Eco72I | CACGTG | 1 cut(s) | 1201 |
| Eco88I | CYCGRG | 1 cut(s) | 136 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1005 |
| FaeI | CATG | 3 cut(s) | 250, 1172, 1192 |
| FaiI | YATR | 7 cut(s) | 248, 414, 510, 525, 1154, 1170, 1190 |
| FaqI | GGGAC | 4 cut(s) | 461, 1073, 1260, 1275 |
| FatI | CATG | 3 cut(s) | 246, 1168, 1188 |
| FauI | CCCGC | 1 cut(s) | 1050 |
| FbaI | TGATCA | 3 cut(s) | 496, 844, 1191 |
| Fnu4HI | GCNGC | 2 cut(s) | 97, 142 |
| FokI | GGATG | 2 cut(s) | 295, 1123 |
| Fsp4HI | GCNGC | 2 cut(s) | 97, 142 |
| FspBI | CTAG | 2 cut(s) | 177, 1016 |
| GluI | GCNGC | 2 cut(s) | 97, 142 |
| HaeIII | GGCC | 2 cut(s) | 796, 1205 |
| HgaI | GACGC | 1 cut(s) | 78 |
| Hin1II | CATG | 3 cut(s) | 250, 1172, 1192 |
| HindIII | AAGCTT | 1 cut(s) | 1211 |
| HinfI | GANTC | 2 cut(s) | 561, 920 |
| HphI | GGTGA | 1 cut(s) | 350 |
| Hpy166II | GTNNAC | 1 cut(s) | 1166 |
| Hpy188I | TCNGA | 7 cut(s) | 55, 202, 703, 916, 937, 1084, 1141 |
| Hpy188III | TCNNGA | 7 cut(s) | 70, 136, 476, 500, 764, 1250, 1304 |
| Hpy8I | GTNNAC | 1 cut(s) | 1166 |
| Hpy99I | CGWCG | 1 cut(s) | 491 |
| HpyAV | CCTTC | 8 cut(s) | 57, 335, 395, 401, 596, 628, 797, 1001 |
| HpyCH4III | ACNGT | 3 cut(s) | 854, 1163, 1319 |
| HpyCH4IV | ACGT | 4 cut(s) | 312, 546, 649, 1200 |
| HpyCH4V | TGCA | 3 cut(s) | 971, 1179, 1188 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1185, 1239 |
| HpyF3I | CTNAG | 3 cut(s) | 418, 590, 1271 |
| HpySE526I | ACGT | 4 cut(s) | 312, 546, 649, 1200 |
| Hsp92II | CATG | 3 cut(s) | 250, 1172, 1192 |
| Ksp22I | TGATCA | 3 cut(s) | 496, 844, 1191 |
| LmnI | GCTCC | 1 cut(s) | 394 |
| Lsp1109I | GCAGC | 1 cut(s) | 108 |
| LweI | GCATC | 2 cut(s) | 76, 273 |
| MaeI | CTAG | 2 cut(s) | 177, 1016 |
| MaeII | ACGT | 4 cut(s) | 312, 546, 649, 1200 |
| MaeIII | GTNAC | 1 cut(s) | 884 |
| MbiI | CCGCTC | 1 cut(s) | 141 |
| MflI | RGATCY | 2 cut(s) | 238, 1021 |
| MhlI | GDGCHC | 1 cut(s) | 1244 |
| MlsI | TGGCCA | 1 cut(s) | 1205 |
| MluCI | AATT | 3 cut(s) | 16, 49, 659 |
| MluNI | TGGCCA | 1 cut(s) | 1205 |
| MmeI | TCCRAC | 4 cut(s) | 225, 330, 1002, 1107 |
| Mox20I | TGGCCA | 1 cut(s) | 1205 |
| MscI | TGGCCA | 1 cut(s) | 1205 |
| MseI | TTAA | 4 cut(s) | 231, 243, 375, 576 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1141 |
| Msp20I | TGGCCA | 1 cut(s) | 1205 |
| Mva1269I | GAATGC | 1 cut(s) | 1233 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1185, 1239 |
| NlaIII | CATG | 3 cut(s) | 250, 1172, 1192 |
| NlaIV | GGNNCC | 2 cut(s) | 449, 929 |
| NspI | RCATGY | 2 cut(s) | 250, 1172 |
| PaeR7I | CTCGAG | 1 cut(s) | 136 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 75, 837 |
| PctI | GAATGC | 1 cut(s) | 1233 |
| PfeI | GAWTC | 2 cut(s) | 561, 920 |
| PkrI | GCNGC | 2 cut(s) | 98, 143 |
| PmaCI | CACGTG | 1 cut(s) | 1201 |
| PmlI | CACGTG | 1 cut(s) | 1201 |
| Ppu21I | YACGTR | 1 cut(s) | 1201 |
| PshAI | GACNNNNGTC | 1 cut(s) | 105 |
| PspCI | CACGTG | 1 cut(s) | 1201 |
| PspN4I | GGNNCC | 2 cut(s) | 449, 929 |
| PspPI | GGNCC | 3 cut(s) | 303, 448, 975 |
| PsuI | RGATCY | 2 cut(s) | 238, 1021 |
| RsaI | GTAC | 7 cut(s) | 175, 193, 298, 656, 695, 818, 1036 |
| RsaNI | GTAC | 7 cut(s) | 174, 192, 297, 655, 694, 817, 1035 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1141 |
| SaqAI | TTAA | 4 cut(s) | 231, 243, 375, 576 |
| SatI | GCNGC | 2 cut(s) | 97, 142 |
| Sau96I | GGNCC | 3 cut(s) | 303, 448, 975 |
| ScaI | AGTACT | 4 cut(s) | 175, 193, 298, 1036 |
| SduI | GDGCHC | 1 cut(s) | 1244 |
| SfaNI | GCATC | 2 cut(s) | 76, 273 |
| Sfr274I | CTCGAG | 1 cut(s) | 136 |
| SinI | GGWCC | 3 cut(s) | 303, 448, 975 |
| SlaI | CTCGAG | 1 cut(s) | 136 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1141 |
| SmlI | CTYRAG | 1 cut(s) | 136 |
| SmoI | CTYRAG | 1 cut(s) | 136 |
| Sse9I | AATT | 3 cut(s) | 16, 49, 659 |
| SsiI | CCGC | 2 cut(s) | 141, 1057 |
| SspMI | CTAG | 2 cut(s) | 177, 1016 |
| TaaI | ACNGT | 3 cut(s) | 854, 1163, 1319 |
| TaiI | ACGT | 4 cut(s) | 315, 549, 652, 1203 |
| TaqI | TCGA | 5 cut(s) | 69, 137, 188, 486, 1216 |
| TasI | AATT | 3 cut(s) | 16, 49, 659 |
| TatI | WGTACW | 4 cut(s) | 173, 191, 296, 1034 |
| TauI | GCSGC | 1 cut(s) | 144 |
| TfiI | GAWTC | 2 cut(s) | 561, 920 |
| Tru1I | TTAA | 4 cut(s) | 231, 243, 375, 576 |
| Tru9I | TTAA | 4 cut(s) | 231, 243, 375, 576 |
| TscAI | CASTG | 2 cut(s) | 400, 598 |
| TseI | GCWGC | 1 cut(s) | 96 |
| TspDTI | ATGAA | 3 cut(s) | 237, 1080, 1125 |
| TspGWI | ACGGA | 4 cut(s) | 224, 681, 1019, 1227 |
| TspRI | CASTG | 2 cut(s) | 400, 598 |
| VpaK11BI | GGWCC | 3 cut(s) | 303, 448, 975 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1005 |
| XapI | RAATTY | 1 cut(s) | 16 |
| XceI | RCATGY | 2 cut(s) | 250, 1172 |
| XhoI | CTCGAG | 1 cut(s) | 136 |
| XspI | CTAG | 2 cut(s) | 177, 1016 |
| ZrmI | AGTACT | 4 cut(s) | 175, 193, 298, 1036 |