MD02G1104900.v1.1

Cathepsin propeptide inhibitor domain (I29)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0024375
Physical Location & Seq
Forward (+)
8474537 .. 8474809
273 bp
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UTR
Exon/CDS
Intron
MD02G1104900.v1.1.491

Sequence Viewer

Length: 273 bp
ATGCAACCAGTCTCCGTTGCCATCATTGCCTCACAAGCCTTTCAGCTCTATTCTGGCGGGCTGTTCACTGATGATAATTGTGGGACAGAATTGAACCACGCTGTTACCATCATTGGGTATGGGACAACTGAAGATGGCACCACCTATTGGTTAATCAAGAACTCATGGTCCGGAAGGTGGGGTGAGAATGGTTACATGAAGATTCTTAGAAACGCCGATGCCCCAGAAGGTGTTTGTGGCCTCGCTATGCAAGCTTCCTATCCAATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

91

Amino Acids

9.77

Weight (kDa)

4.5

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 2 - 89 2e-29 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024375)

Species Orthologous Gene IDs
malus_domestica MD02G1104900.v1.1
rosa_chinensis RchiOBHm_Chr2g0143101
rosa_multiflora Rmu_sc0002277.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 114, 147, 177
AgsI TTSAA 1 cut(s) 94
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 46, 254
AluI AGCT 2 cut(s) 46, 254
Alw26I GTCTC 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 137
BccI CCATC 3 cut(s) 29, 116, 128
BcoDI GTCTC 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 147, 177
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 170
BseLI CCNNNNNNNGG 3 cut(s) 114, 147, 177
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 8
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 2 cut(s) 97, 136
BslI CCNNNNNNNGG 3 cut(s) 114, 147, 177
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 97, 136
BsnI GGCC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 170
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 59, 252
BstDEI CTNAG 1 cut(s) 206
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 26, 35, 251
BsuRI GGCC 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 59, 252
Cfr13I GGNCC 1 cut(s) 168
CviAII CATG 2 cut(s) 165, 196
CviJI RGCY 5 cut(s) 38, 46, 61, 240, 254
CviKI_1 RGCY 5 cut(s) 38, 46, 61, 240, 254
DdeI CTNAG 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 2 cut(s) 168, 199
FaiI YATR 5 cut(s) 120, 166, 197, 248, 269
FaqI GGGAC 2 cut(s) 97, 136
FatI CATG 2 cut(s) 164, 195
FauI CCCGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 168, 199
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 157, 171
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 168, 221
HpyCH4V TGCA 2 cut(s) 4, 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 35, 251
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 168, 199
Kpn2I TCCGGA 1 cut(s) 170
LpnPI CCDG 4 cut(s) 21, 39, 184, 237
LweI GCATC 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 103, 191
MboII GAAGA 2 cut(s) 143, 211
MluCI AATT 3 cut(s) 76, 89, 264
MnlI CCTC 2 cut(s) 40, 251
MroI TCCGGA 1 cut(s) 170
MseI TTAA 1 cut(s) 152
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 26, 35, 251
NlaIII CATG 2 cut(s) 168, 199
NlaIV GGNNCC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 152
Sau96I GGNCC 1 cut(s) 168
SetI ASST 5 cut(s) 48, 146, 179, 232, 256
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 168
Sse9I AATT 3 cut(s) 76, 89, 264
SsiI CCGC 1 cut(s) 57
TasI AATT 3 cut(s) 76, 89, 264
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.