Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024375

Physical Location & Seq

Genomic Coordinates Forward (+)

60820145 .. 60820522

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCATTGCCCAGAAGGAAGCAAGCCATGCAGCCTCGATAACTGGTCACGAAGAATCAAAGATTTGCCTGCAAATAGTGAAAGTGCCCTTCTTAAGGCCGTCGCCAATCAACCCATTTCTGTTGCCATTTATGCTAGTGGATCTAATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACTTGTGGAACAAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGCGTCAGTGATGATGGGACTAATTATTGGTTGGTTAAGAACTCATGGGGGGCACAATGGGGTCAAGAAGGGTACATAAGAATGCACAGAGATGTTGTGGCACATGAAGGTCTGTGTGGTTTTGCTATTGCAGCCTCTTACCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

125

Amino Acids

13.38

Weight (kDa)

6.01

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	16 - 124	5.5e-33	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024375)

Species	Orthologous Gene IDs
malus_domestica	MD02G1104900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143101
rosa_multiflora	Rmu_sc0002277.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	162
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	30, 356
BaeGI	GKGCMC	2 cut(s)	88, 280
BbvI	GCAGC	2 cut(s)	42, 368
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	135, 197
BfrI	CTTAAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	31, 357
BlsI	GCNGC	2 cut(s)	32, 358
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	4
BseDI	CCNNGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	4
BseNI	ACTGG	1 cut(s)	47
BseSI	GKGCMC	2 cut(s)	88, 280
BseXI	GCAGC	2 cut(s)	42, 368
BshFI	GGCC	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	88, 280
Bsp143I	GATC	1 cut(s)	140
Bsp19I	CCATGG	1 cut(s)	202
BspANI	GGCC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	23, 69
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 131, 356
BstSLI	GKGCMC	2 cut(s)	88, 280
BstV1I	GCAGC	2 cut(s)	42, 368
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	238, 369
Cac8I	GCNNGC	2 cut(s)	23, 69
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	27, 203, 270, 329
CviJI	RGCY	5 cut(s)	25, 33, 98, 195, 359
CviKI_1	RGCY	5 cut(s)	25, 33, 98, 195, 359
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	4 cut(s)	30, 206, 273, 332
FaiI	YATR	8 cut(s)	28, 132, 204, 225, 271, 302, 330, 376
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	4 cut(s)	26, 202, 269, 328
Fnu4HI	GCNGC	2 cut(s)	31, 357
Fsp4HI	GCNGC	2 cut(s)	31, 357
FspBI	CTAG	2 cut(s)	135, 197
GluI	GCNGC	2 cut(s)	31, 357
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	30, 206, 273, 332
HinfI	GANTC	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	48, 290
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	8, 98, 287, 326
HpyCH4V	TGCA	6 cut(s)	4, 30, 71, 310, 356, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 131, 356
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	30, 206, 273, 332
Kzo9I	GATC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	24, 28, 81, 162
Lsp1109I	GCAGC	2 cut(s)	42, 368
MaeI	CTAG	2 cut(s)	135, 197
MaeIII	GTNAC	2 cut(s)	45, 208
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	88, 280
MluCI	AATT	3 cut(s)	145, 152, 247
MnlI	CCTC	2 cut(s)	44, 370
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	93, 261
MslI	CAYNNNNRTG	2 cut(s)	305, 315
MspCI	CTTAAG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	27, 131, 356
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	4 cut(s)	30, 206, 273, 332
NmuCI	GTSAC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	32, 358
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	305, 315
SaqAI	TTAA	2 cut(s)	93, 261
SatI	GCNGC	2 cut(s)	31, 357
Sau3AI	GATC	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	88, 280
SetI	ASST	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	305, 315
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	145, 152, 247
SspMI	CTAG	2 cut(s)	135, 197
StyI	CCWWGG	1 cut(s)	202
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	145, 152, 247
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	93, 261
Tru9I	TTAA	2 cut(s)	93, 261
TscAI	CASTG	2 cut(s)	238, 376
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	30, 356
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	238, 376
Vha464I	CTTAAG	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	92
XspI	CTAG	2 cut(s)	135, 197
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.