Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0022373

Physical Location & Seq

Genomic Coordinates Reverse (-)

10031529 .. 10033659

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1123300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGACCAGGGATTCCCGTACTCGCCGGCGGAGACGGCCAAAGTCCGCCGCGTACGGTTCGGGATACTGAGTCCTGATGAAATCAGACAAATGTCTGTGGCTGAGATTCAGCACGGTGAGACAACGGTGGAGGGAAAACCGAAGACGGGTGGTCTGAGTGATCCCCGGCTTGGTACAATTGACCGGAAGATCAAATGCGAGACTTGTGCTTCCAACATGGCTGACTGCCCTGGCCATTTCGGTCACCTTGAGCTTGCCAAACCAATGTACCACATCGGGTTCATGAAGACCGTGTTGTCTGTGATCCGTTGCGTCTGCTTCAATTGCTCGAAAGTTCTAGCCGACGAGGAAGACCAGAAGTTTAAGCAAGCTTTGAGAATCAAATGCCCGAAAGATAGGCTAAAACAGATTGTGGATGCGTGCAGAACCAAAACTAAATGTGAAGGCGGTGACGACATTGATGTCCAAGGCCTAGAGTCTGAAGAGCCTGTCAAGAAAAGTCATGGCGGCTGCGGTGCTAAGCAGCCCAAGTTCTCTCTAGACGGTATCAAAATGATAGCGGAGTACAAAGCCCAGAGGAAGAAAAAAGATGACCAGGAACAGCTTCCTGAACCGGTGGAAAGGAAACAGACTCTTACGGCTGAAAGGGTTCTGAATGTTTTAAAGAGGATAAGTGATGAAGAACTCCAACTATTGGGATTCAATCCCGATGACTCTCGACCAGATTGGATGATCTTACAAGTTCTACCTATTCCTCCACTAGCTGTGAGACCTTCCGTGATGATGGACACTTCATCCAAGAGTGAGGATGATTTAACTTATCAACTGGGAACGATCATTCGTCATAATGACAATCTGAGGCGACAGGAACGAATTGGATCACCGGCTCGTATAATTTCAGAGTTTGCACAAATGTTGCAGTTCCACATTACGACATATTTTGACAATGAGTTGCCTGGTCTACCACGGGCTACTCAGAGATCAGGGAGGCCTATTAAATCGGTATGTAGTAGGCTGAAGGCCAAAGGAGGCCGTGTAAGAGGCAACTTAATGGGGAAACGTGTTGATTTTTCAGCACGAACGGTGATCACTCCGGATCCAAACATAAACATCGATGAATTAGGGGTGCCGTGGAGTATTGCTTTGAATCTCACATACCCGGAGACTGTGACTCCGTATAATATTGAAAGGTTGAAGGAGCTTGTTGAGTATGGCCCTCATCCTCCGCCCGGTAAAACTGGTGCGAAGTATATAATAAGAGATGACGGGCAAAGGCTTGATCTTCGTTATTTGAAGAAAAGCAGTGATCATCATTTGGAGCTTGGATATAAGGCATTGCTCTTTCATTCTAATAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

454

Amino Acids

51.13

Weight (kDa)

8.94

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	13 - 350	2.6e-109	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	352 - 443	2.7e-24	RNA polymerase Rpb1, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022373)

Species	Orthologous Gene IDs
malus_domestica	MD02G1123300.v1.1 MD02G1126000.v1.1
rosa_multiflora	Rmu_sc0003434.1_g000004
rosa_samantha	Rh2DG124100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	295, 461
AccB1I	GGYRCC	1 cut(s)	1126
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	961
AccII	CGCG	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	1093
AciI	CCGC	8 cut(s)	29, 46, 49, 447, 507, 513, 560, 1226
AclWI	GGATC	5 cut(s)	155, 298, 886, 1091, 1104
AcoI	YGGCCR	2 cut(s)	36, 232
AcuI	CTGAAG	2 cut(s)	501, 1037
AfaI	GTAC	5 cut(s)	20, 54, 175, 269, 566
AfiI	CCNNNNNNNGG	4 cut(s)	146, 170, 694, 1229
AflIII	ACRYGT	1 cut(s)	1060
AgeI	ACCGGT	1 cut(s)	613
AgsI	TTSAA	6 cut(s)	322, 703, 1147, 1187, 1195, 1294
AhdI	GACNNNNNGTC	1 cut(s)	150
AjnI	CCWGG	4 cut(s)	6, 229, 594, 955
AluBI	AGCT	6 cut(s)	253, 371, 604, 764, 1201, 1321
AluI	AGCT	6 cut(s)	253, 371, 604, 764, 1201, 1321
Alw26I	GTCTC	5 cut(s)	26, 113, 194, 763, 1157
AlwI	GGATC	5 cut(s)	155, 298, 886, 1091, 1104
Aor13HI	TCCGGA	1 cut(s)	1093
AoxI	GGCC	7 cut(s)	36, 232, 469, 989, 1020, 1030, 1213
ApeKI	GCWGC	2 cut(s)	510, 523
AsiGI	ACCGGT	1 cut(s)	613
Asp700I	GAANNNNTTC	2 cut(s)	603, 648
AspS9I	GGNCC	2 cut(s)	4, 1214
AsuC2I	CCSGG	3 cut(s)	166, 1160, 1230
AsuHPI	GGTGA	5 cut(s)	128, 236, 461, 873, 1096
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	251, 284
BalI	TGGCCA	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	1096
BanI	GGYRCC	1 cut(s)	1126
BbsI	GAAGAC	3 cut(s)	149, 293, 357
BbvI	GCAGC	2 cut(s)	497, 535
BccI	CCATC	1 cut(s)	778
BceAI	ACGGC	4 cut(s)	51, 654, 1017, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	4 cut(s)	8, 231, 596, 957
BciVI	GTATCC	1 cut(s)	57
BclI	TGATCA	2 cut(s)	1086, 1306
BcnI	CCSGG	3 cut(s)	166, 1160, 1230
BcoDI	GTCTC	5 cut(s)	26, 113, 194, 763, 1157
BfaI	CTAG	4 cut(s)	338, 473, 539, 761
BfuI	GTATCC	1 cut(s)	57
BisI	GCNGC	4 cut(s)	49, 508, 511, 524
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	4 cut(s)	50, 509, 512, 525
Bme1390I	CCNGG	7 cut(s)	8, 166, 231, 596, 957, 1160, 1230
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	4, 1214
BmiI	GGNNCC	2 cut(s)	1098, 1128
BmrFI	CCNGG	7 cut(s)	8, 166, 231, 596, 957, 1160, 1230
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	836
BoxI	GACNNNNGTC	1 cut(s)	91
BpiI	GAAGAC	3 cut(s)	149, 293, 357
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	3 cut(s)	166, 1160, 1230
Bsa29I	ATCGAT	1 cut(s)	1113
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	6 cut(s)	7, 164, 229, 466, 965, 1130
BsaWI	WCCGGW	3 cut(s)	183, 613, 1093
BsaXI	ACNNNNNCTCC	4 cut(s)	1020, 1050, 1156, 1186
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 170, 694, 1229
Bse118I	RCCGGY	3 cut(s)	25, 613, 883
Bse1I	ACTGG	2 cut(s)	831, 1243
Bse3DI	GCAATG	1 cut(s)	1334
BseAI	TCCGGA	1 cut(s)	1093
BseBI	CCWGG	4 cut(s)	8, 231, 596, 957
BseCI	ATCGAT	1 cut(s)	1113
BseDI	CCNNGG	6 cut(s)	7, 164, 229, 466, 965, 1130
BseGI	GGATG	5 cut(s)	421, 735, 794, 814, 1219
BseLI	CCNNNNNNNGG	4 cut(s)	146, 170, 694, 1229
BseMI	GCAATG	1 cut(s)	1334
BseMII	CTCAG	5 cut(s)	59, 93, 146, 848, 989
BseNI	ACTGG	2 cut(s)	831, 1243
BseXI	GCAGC	2 cut(s)	497, 535
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	7 cut(s)	38, 234, 471, 991, 1022, 1032, 1215
BshNI	GGYRCC	1 cut(s)	1126
BshTI	ACCGGT	1 cut(s)	613
BshVI	ATCGAT	1 cut(s)	1113
BsiSI	CCGG	8 cut(s)	26, 166, 184, 614, 884, 1094, 1160, 1230
BsiWI	CGTACG	1 cut(s)	52
BslI	CCNNNNNNNGG	4 cut(s)	146, 170, 694, 1229
BsmAI	GTCTC	5 cut(s)	26, 113, 194, 763, 1157
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	7 cut(s)	38, 234, 471, 991, 1022, 1032, 1215
Bso31I	GGTCTC	1 cut(s)	763
Bsp13I	TCCGGA	1 cut(s)	1093
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	8 cut(s)	29, 46, 49, 447, 507, 513, 560, 1226
BspANI	GGCC	7 cut(s)	38, 234, 471, 991, 1022, 1032, 1215
BspCNI	CTCAG	5 cut(s)	60, 94, 147, 849, 988
BspDI	ATCGAT	1 cut(s)	1113
BspEI	TCCGGA	1 cut(s)	1093
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	1098, 1128
BspPI	GGATC	5 cut(s)	155, 298, 886, 1091, 1104
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	1126
BspTNI	GGTCTC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	1334
BsrFI	RCCGGY	3 cut(s)	25, 613, 883
BsrI	ACTGG	2 cut(s)	831, 1243
BssAI	RCCGGY	3 cut(s)	25, 613, 883
BssECI	CCNNGG	6 cut(s)	7, 164, 229, 466, 965, 1130
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	4 cut(s)	8, 231, 596, 957
Bst4CI	ACNGT	7 cut(s)	57, 116, 127, 292, 545, 1084, 1168
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	4 cut(s)	27, 255, 369, 421
BstDEI	CTNAG	6 cut(s)	68, 102, 155, 519, 857, 975
BstDSI	CCRYGG	2 cut(s)	965, 1130
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	5 cut(s)	421, 735, 794, 814, 1219
BstFNI	CGCG	1 cut(s)	51
BstMAI	GTCTC	5 cut(s)	26, 113, 194, 763, 1157
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 324
BstNI	CCWGG	4 cut(s)	8, 231, 596, 957
BstPAI	GACNNNNGTC	1 cut(s)	91
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	7 cut(s)	6, 164, 229, 594, 955, 1158, 1228
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	497, 535
BstV2I	GAAGAC	3 cut(s)	149, 293, 357
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
Bsu15I	ATCGAT	1 cut(s)	1113
BsuI	GTATCC	1 cut(s)	57
BsuRI	GGCC	7 cut(s)	38, 234, 471, 991, 1022, 1032, 1215
BsuTUI	ATCGAT	1 cut(s)	1113
BtgI	CCRYGG	2 cut(s)	965, 1130
BtsCI	GGATG	5 cut(s)	421, 735, 794, 814, 1219
BtsI	GCAGTG	1 cut(s)	1309
BtsIMutI	CAGTG	1 cut(s)	1309
Cac8I	GCNNGC	4 cut(s)	27, 255, 369, 421
CciI	TCATGA	1 cut(s)	282
Cfr10I	RCCGGY	3 cut(s)	25, 613, 883
Cfr13I	GGNCC	2 cut(s)	4, 1214
ClaI	ATCGAT	1 cut(s)	1113
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	5 cut(s)	19, 53, 174, 268, 565
CspAI	ACCGGT	1 cut(s)	613
CviAII	CATG	3 cut(s)	217, 283, 503
CviQI	GTAC	5 cut(s)	19, 53, 174, 268, 565
DdeI	CTNAG	6 cut(s)	68, 102, 155, 519, 857, 975
DraI	TTTAAA	1 cut(s)	663
DrdI	GACNNNNNNGTC	2 cut(s)	295, 461
DriI	GACNNNNNGTC	1 cut(s)	150
DseDI	GACNNNNNNGTC	2 cut(s)	295, 461
EaeI	YGGCCR	2 cut(s)	36, 232
Eam1104I	CTCTTC	1 cut(s)	477
Eam1105I	GACNNNNNGTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	3 cut(s)	35, 44, 1215
Eco130I	CCWWGG	1 cut(s)	466
Eco147I	AGGCCT	2 cut(s)	471, 991
Eco31I	GGTCTC	1 cut(s)	763
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	501, 1037
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	4 cut(s)	6, 229, 594, 955
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	3 cut(s)	220, 286, 506
FatI	CATG	3 cut(s)	216, 282, 502
FbaI	TGATCA	2 cut(s)	1086, 1306
FblI	GTMKAC	1 cut(s)	961
Fnu4HI	GCNGC	4 cut(s)	49, 508, 511, 524
FokI	GGATG	5 cut(s)	428, 742, 781, 821, 1206
Fsp4HI	GCNGC	4 cut(s)	49, 508, 511, 524
FspBI	CTAG	4 cut(s)	338, 473, 539, 761
GluI	GCNGC	4 cut(s)	49, 508, 511, 524
HaeIII	GGCC	7 cut(s)	38, 234, 471, 991, 1022, 1032, 1215
HapII	CCGG	8 cut(s)	26, 166, 184, 614, 884, 1094, 1160, 1230
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	220, 286, 506
HindIII	AAGCTT	1 cut(s)	369
HpaII	CCGG	8 cut(s)	26, 166, 184, 614, 884, 1094, 1160, 1230
HphI	GGTGA	5 cut(s)	128, 236, 461, 873, 1096
Hpy166II	GTNNAC	1 cut(s)	962
Hpy188I	TCNGA	7 cut(s)	86, 156, 481, 654, 858, 901, 978
Hpy188III	TCNNGA	9 cut(s)	61, 74, 283, 493, 539, 608, 707, 717, 1094
Hpy8I	GTNNAC	1 cut(s)	962
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	437, 783, 1012, 1189
HpyCH4III	ACNGT	7 cut(s)	57, 116, 127, 292, 545, 1084, 1168
HpyCH4IV	ACGT	1 cut(s)	1060
HpyCH4V	TGCA	3 cut(s)	423, 908, 919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 324
HpyF3I	CTNAG	6 cut(s)	68, 102, 155, 519, 857, 975
HpySE526I	ACGT	1 cut(s)	1060
Hsp92II	CATG	3 cut(s)	220, 286, 506
Kpn2I	TCCGGA	1 cut(s)	1093
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	2 cut(s)	1086, 1306
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	1198, 1318
Lsp1109I	GCAGC	2 cut(s)	497, 535
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	4 cut(s)	338, 473, 539, 761
MaeII	ACGT	1 cut(s)	1060
MaeIII	GTNAC	3 cut(s)	242, 449, 1168
MboII	GAAGA	9 cut(s)	154, 199, 298, 362, 494, 592, 692, 1274, 1306
MfeI	CAATTG	2 cut(s)	177, 322
MflI	RGATCY	1 cut(s)	1096
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	5 cut(s)	177, 322, 873, 894, 1118
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	5 cut(s)	79, 485, 625, 707, 1165
MmeI	TCCRAC	2 cut(s)	237, 712
Mox20I	TGGCCA	1 cut(s)	234
MreI	CGCCGGCG	1 cut(s)	25
MroI	TCCGGA	1 cut(s)	1093
MroNI	GCCGGC	1 cut(s)	25
MroXI	GAANNNNTTC	2 cut(s)	603, 648
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	5 cut(s)	363, 662, 815, 996, 1049
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	8 cut(s)	26, 166, 184, 614, 884, 1094, 1160, 1230
MspR9I	CCNGG	7 cut(s)	8, 166, 231, 596, 957, 1160, 1230
MunI	CAATTG	2 cut(s)	177, 322
MvaI	CCWGG	4 cut(s)	8, 231, 596, 957
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	35, 324
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	3 cut(s)	166, 1160, 1230
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	220, 286, 506
NlaIV	GGNNCC	2 cut(s)	1098, 1128
NmuCI	GTSAC	3 cut(s)	242, 449, 1168
PagI	TCATGA	1 cut(s)	282
PceI	AGGCCT	2 cut(s)	471, 991
PciSI	GCTCTTC	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	603, 648
PfeI	GAWTC	5 cut(s)	12, 106, 378, 699, 1147
Pfl23II	CGTACG	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	694
PinAI	ACCGGT	1 cut(s)	613
PkrI	GCNGC	4 cut(s)	50, 509, 512, 525
PleI	GAGTC	5 cut(s)	78, 484, 625, 707, 1165
PpsI	GAGTC	5 cut(s)	78, 484, 625, 707, 1165
PshAI	GACNNNNGTC	1 cut(s)	91
Psp6I	CCWGG	4 cut(s)	6, 229, 594, 955
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	4 cut(s)	6, 229, 594, 955
PspLI	CGTACG	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	1098, 1128
PspPI	GGNCC	2 cut(s)	4, 1214
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	5 cut(s)	20, 54, 175, 269, 566
RsaNI	GTAC	5 cut(s)	19, 53, 174, 268, 565
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	363, 662, 815, 996, 1049
SatI	GCNGC	4 cut(s)	49, 508, 511, 524
Sau96I	GGNCC	2 cut(s)	4, 1214
SchI	GAGTC	5 cut(s)	79, 485, 625, 707, 1165
ScrFI	CCNGG	7 cut(s)	8, 166, 231, 596, 957, 1160, 1230
SfaNI	GCATC	1 cut(s)	406
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	5 cut(s)	177, 322, 873, 894, 1118
SseBI	AGGCCT	2 cut(s)	471, 991
SsiI	CCGC	8 cut(s)	29, 46, 49, 447, 507, 513, 560, 1226
SspI	AATATT	1 cut(s)	1183
SspMI	CTAG	4 cut(s)	338, 473, 539, 761
StuI	AGGCCT	2 cut(s)	471, 991
StyD4I	CCNGG	7 cut(s)	6, 164, 229, 594, 955, 1158, 1228
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	7 cut(s)	57, 116, 127, 292, 545, 1084, 1168
TaiI	ACGT	1 cut(s)	1063
TaqI	TCGA	3 cut(s)	329, 718, 1113
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	5 cut(s)	177, 322, 873, 894, 1118
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	2 cut(s)	51, 510
TfiI	GAWTC	5 cut(s)	12, 106, 378, 699, 1147
Tru1I	TTAA	5 cut(s)	363, 662, 815, 996, 1049
Tru9I	TTAA	5 cut(s)	363, 662, 815, 996, 1049
TscAI	CASTG	1 cut(s)	1309
TseFI	GTSAC	3 cut(s)	242, 449, 1168
TseI	GCWGC	2 cut(s)	510, 523
Tsp45I	GTSAC	3 cut(s)	242, 449, 1168
TspDTI	ATGAA	7 cut(s)	93, 271, 299, 693, 783, 1131, 1334
TspGWI	ACGGA	3 cut(s)	296, 766, 1164
TspRI	CASTG	1 cut(s)	1309
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	961
XmnI	GAANNNNTTC	2 cut(s)	603, 648
XspI	CTAG	4 cut(s)	338, 473, 539, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.